Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M04
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      29   0.77 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   4.1  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   9.5  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = -2

Query: 729 FVTLNFICRKS-AVIKSFVIAA*YHTCYLNKTYVLSEQYKELLLHRKSNHTYCITLSIIN 553
           F  L F+C     ++ SF+ A  +   +L    ++S Q++ L L    +HT+ I  +   
Sbjct: 18  FFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIE-AFFY 76

Query: 552 TMFGYFLMKANSTVFHICM 496
             F +F   ++   FHI +
Sbjct: 77  WFFFFFFFFSHCRRFHIAI 95


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = -2

Query: 729 FVTLNFICRKSAVIKSFVIAA*YHTCYLNKTYVLSEQYKELLLHRKSNHTYCITLSIINT 550
           F  ++F+C     +  F+     H    N   +    + E+L   KSNH+Y   ++ I+T
Sbjct: 724 FSQISFLC---GFLNCFIQKKGIHNVTPNNLVIFKNLFPEVLSFVKSNHSYDPIINCIST 780


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 649 VTSMILCSDNK*FYYCRFPTNE 714
           +T + LCSDNK  YY R   N+
Sbjct: 387 ITELFLCSDNK--YYVRHLVNQ 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,030
Number of Sequences: 5004
Number of extensions: 67575
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)