Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M04
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0256 - 23647736-23648947                                         29   4.3  
12_02_0016 + 12350435-12350537,12351517-12351583,12351981-123520...    28   7.5  
03_01_0079 + 637010-637224,638226-638391,638498-638714,639422-63...    28   9.9  

>05_05_0256 - 23647736-23648947
          Length = 403

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 701 FRQMKFNVTNGXPQYAWKEMKQIG 772
           F  ++  + NG  QYAW E++ +G
Sbjct: 287 FEMVELAINNGEAQYAWNELQSLG 310


>12_02_0016 +
           12350435-12350537,12351517-12351583,12351981-12352047,
           12352301-12352381,12352416-12352445,12352625-12352665,
           12353083-12353212,12354096-12354327,12355244-12355332
          Length = 279

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 134 LTPPLRPCTLHEITHLQIPRRRLR*MSCIVVT 39
           + PP RP  +  +  L  PR+RL  ++C+++T
Sbjct: 10  VAPPARPIPIAAVAPLARPRQRLPAVACLLMT 41


>03_01_0079 +
           637010-637224,638226-638391,638498-638714,639422-639582
          Length = 252

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 32  NIMLLQYNSFNVSDVWGFVSVLSRAVCRDVAGG 130
           N+ L  YN  N  D + F SVL   VC    GG
Sbjct: 116 NMALAWYNENNPEDCYEFTSVLLHDVCNFCDGG 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,463,660
Number of Sequences: 37544
Number of extensions: 402005
Number of successful extensions: 871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)