Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M04
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81143-6|CAI58649.1|  283|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    29   3.9  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    29   3.9  
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin pr...    28   8.9  
U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin pr...    28   8.9  

>Z81143-6|CAI58649.1|  283|Caenorhabditis elegans Hypothetical
           protein ZK265.9 protein.
          Length = 283

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -1

Query: 547 VWILSYES*FHCFSYLYGFYIISRHTIAYLQN*KAQNNNYLVNRKLTQHNRTIRVPQ 377
           VW   Y+   HCF  +Y   II+   IAY    +  +  + ++    +H+R  R  Q
Sbjct: 162 VWTPGYDISGHCFLMIYSILIITEEAIAYRHYQQVTDAVHQMDGDREEHDRLTRCIQ 218


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 497 WLLHHFTTHDC 465
           WLLH+ TTHDC
Sbjct: 278 WLLHYLTTHDC 288


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 497 WLLHHFTTHDC 465
           WLLH+ TTHDC
Sbjct: 239 WLLHYLTTHDC 249


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 463 YLQN*KAQNNNYLVNRKLTQHNRTIRVPQRTGAPFCSYFKPRPPR 329
           Y QN K +N+ Y V+    QH      P R  AP    FK  PP+
Sbjct: 606 YYQNHKYENSQYQVD----QHPAESAAPPRPVAPMEPLFKQAPPQ 646


>U97193-9|AAL13319.1|  401|Caenorhabditis elegans Tropomodulin
           protein 1, isoform b protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 451 NFASMQSCVVK*CKSHTDMKNSGISFHKKVSKHRI 555
           N   ++SC+ +  +  TD+K   I+  K+VSK RI
Sbjct: 229 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERI 263


>U97193-8|AAB52440.3|  392|Caenorhabditis elegans Tropomodulin
           protein 1, isoform a protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 451 NFASMQSCVVK*CKSHTDMKNSGISFHKKVSKHRI 555
           N   ++SC+ +  +  TD+K   I+  K+VSK RI
Sbjct: 220 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERI 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,409,136
Number of Sequences: 27780
Number of extensions: 389175
Number of successful extensions: 992
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)