Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_M02
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    30   0.018
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    30   0.018
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.4  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 439 VQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAK 278
           ++ +SGGE +R++    +     +   DEP++ LDS   L   +V+K   +  K
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGK 270



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 700 EILVLLGENGTGKTTFIRML 641
           E+L +LG +G GKTT +  L
Sbjct: 105 ELLAILGSSGAGKTTLLNTL 124


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -3

Query: 439 VQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAK 278
           ++ +SGGE +R++    +     +   DEP++ LDS   L   +V+K   +  K
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGK 270



 Score = 26.6 bits (56), Expect = 0.22
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 700 EILVLLGENGTGKTTFIRML 641
           E+L +LG +G GKTT +  L
Sbjct: 105 ELLAILGSSGAGKTTLLNTL 124


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 612 EPSSGSRFPANILINVVFPVPFS-PSNTKISESENSPGITRNP 737
           E SS  +  +  ++    P P S  +NT  S S +SP +T  P
Sbjct: 138 EKSSKLKNKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAP 180


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -3

Query: 388 LGKPADVYLIDEPSAYLDSEQRLVAAKVIKRFILHAKRT 272
           +GK +   + D P+ YL+ + + +   +  RF   A+ T
Sbjct: 19  IGKGSKKTVFDIPNDYLNDKYKPLGVSLSNRFKQDAEET 57


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,871
Number of Sequences: 336
Number of extensions: 4059
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)