Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L21
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   1.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 45  LSNKWLGNENVSNLCRYKINGTNYN 119
           LSNK + N N  N   Y  N  NYN
Sbjct: 318 LSNKTIHNNNNYNNNNYNNNYNNYN 342


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 730 DPLKPKSLKGIEYEPDN 680
           D  KP++ KGI  EP N
Sbjct: 550 DSTKPETSKGINAEPSN 566


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 311  CDMNSFKTMQILLRSTLIVNKLIKPHKPLFMYSLSV 204
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1889 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1923


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 311  CDMNSFKTMQILLRSTLIVNKLIKPHKPLFMYSLSV 204
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1885 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1919


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 232 LCGLINLLTINVERNNI 282
           LC L NL T+N+  N +
Sbjct: 167 LCSLDNLQTLNLTENRL 183


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 669  QWGLLSGSYSMPFRLLGLRGSM 734
            Q+G   G Y  P+   G RGS+
Sbjct: 1819 QYGSQYGQYGAPYDHYGSRGSV 1840


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 502 QNQIIVSSFTKTISQLETPKVTKRF 576
           +NQ +V +   TI  +   KVT RF
Sbjct: 386 RNQDVVQTHVLTIHTIPEVKVTPRF 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,495
Number of Sequences: 438
Number of extensions: 4366
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)