Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L20
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80029-8|ABC71800.1|  166|Caenorhabditis elegans Hypothetical pr...    31   0.40 
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    29   1.6  
U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set (trithorax/...    27   4.9  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set (trithorax/...    27   4.9  
AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical ...    27   4.9  
U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of ...    27   8.6  
U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of ...    27   8.6  
U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of ...    27   8.6  
AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gat...    27   8.6  

>U80029-8|ABC71800.1|  166|Caenorhabditis elegans Hypothetical
           protein T20D4.20 protein.
          Length = 166

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +3

Query: 264 VIKSNTYFYCAITGNKAYCALNYQLDLVRDAQAHRTPTNKQTHSFXSTKNYLYTXFDP 437
           +I+S T   C     K   A  Y LDLV   +     T KQ        N+L T F+P
Sbjct: 29  IIESGTGTNCTEVTLKKLLACLYCLDLVECEKEQDNSTGKQVRESCEIMNFLSTDFNP 86


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 272 FYYTHYLFVAYVFLNV 225
           FYY HYL VA +F+N+
Sbjct: 37  FYYEHYLSVASIFINI 52


>U41508-3|AAN39664.1|  317|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform a protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  KGNIAHTANFNYANIKIIF 143
           K N  HTA FN  NI++IF
Sbjct: 207 KLNFVHTAGFNPGNIRVIF 225


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform b protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 87  KGNIAHTANFNYANIKIIF 143
           K N  HTA FN  NI++IF
Sbjct: 442 KLNFVHTAGFNPGNIRVIF 460


>AF047655-4|AAC04403.1|  200|Caenorhabditis elegans Hypothetical
           protein C17B7.9 protein.
          Length = 200

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = -1

Query: 191 NLFV*ITLRCCEVKGSKYNFNICIVKIGCMG----YIPFALSIGXKIRVN*HIQPDCANL 24
           NL++    R  E K   +N   C  KI C+G     IP   +IG   R   ++  D A  
Sbjct: 55  NLYMKDKKRLKEYKDECHNVLSCYNKIKCLGTNGEKIPAIKNIGKHCRATDYVHDDFAKC 114

Query: 23  NKKLS 9
           + KL+
Sbjct: 115 SDKLN 119


>U64843-16|AAX55689.1|  442|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform c protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 461 SHLGRLHVWIEXCI*IVFSTLK*MCLFVCWRSVC 360
           S++  + VW+  CI  VF T+  +  FVC+ S C
Sbjct: 297 SYVKAMDVWMLGCISFVFGTMVELA-FVCYISRC 329


>U64843-15|AAF98227.2|  489|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform a protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 461 SHLGRLHVWIEXCI*IVFSTLK*MCLFVCWRSVC 360
           S++  + VW+  CI  VF T+  +  FVC+ S C
Sbjct: 297 SYVKAMDVWMLGCISFVFGTMVELA-FVCYISRC 329


>U64843-14|AAM45353.1|  475|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 1, isoform b protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 461 SHLGRLHVWIEXCI*IVFSTLK*MCLFVCWRSVC 360
           S++  + VW+  CI  VF T+  +  FVC+ S C
Sbjct: 297 SYVKAMDVWMLGCISFVFGTMVELA-FVCYISRC 329


>AF303088-1|AAG36975.1|  489|Caenorhabditis elegans serotonin-gated
           chloride channel protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 461 SHLGRLHVWIEXCI*IVFSTLK*MCLFVCWRSVC 360
           S++  + VW+  CI  VF T+  +  FVC+ S C
Sbjct: 297 SYVKAMDVWMLGCISFVFGTMVELA-FVCYISRC 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,051,843
Number of Sequences: 27780
Number of extensions: 196912
Number of successful extensions: 410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)