Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L18
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760    110   1e-24
01_06_1583 + 38436958-38437069,38438167-38438300,38438542-384386...    90   2e-18
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850...    33   0.32 
03_04_0184 - 18210875-18212065                                         29   3.0  
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385     28   6.9  
04_04_1582 - 34590698-34591199,34593849-34594690                       28   6.9  
11_03_0190 - 11350497-11350832,11351926-11352303,11353897-113541...    28   9.1  
10_08_0223 - 15986763-15987575                                         28   9.1  

>05_04_0348 + 20485884-20485995,20486818-20486951,20487668-20487760
          Length = 112

 Score =  110 bits (264), Expect = 1e-24
 Identities = 45/78 (57%), Positives = 58/78 (74%)
 Frame = -2

Query: 701 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGIT 522
           P GN + G+KIF  +CAQCHTV+ G  HK GPNL+G FGR++G   G+SYS ANK   + 
Sbjct: 8   PPGNPKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSTANKNMAVI 67

Query: 521 WNDDTLFEYLENPKKYIP 468
           W ++TL++YL NPKKYIP
Sbjct: 68  WEENTLYDYLLNPKKYIP 85



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/32 (71%), Positives = 25/32 (78%)
 Frame = -3

Query: 484 PRNTSPGTKMVFAGLKKANERADLIAYLKSAT 389
           P+   PGTKMVF GLKK  ERADLI+YLK AT
Sbjct: 80  PKKYIPGTKMVFPGLKKPQERADLISYLKEAT 111


>01_06_1583 +
           38436958-38437069,38438167-38438300,38438542-38438608,
           38438900-38438937,38439302-38439391
          Length = 146

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 37/76 (48%), Positives = 51/76 (67%)
 Frame = -2

Query: 701 PAGNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGIT 522
           P G+A  G+KIF  +CA CH V+    HK GPNL+G FGR++G A GFSY   +K   + 
Sbjct: 8   PPGDAAAGEKIFRTKCAYCHAVDKAAGHKHGPNLNGLFGRQSGTAPGFSYPSGDKIVPVI 67

Query: 521 WNDDTLFEYLENPKKY 474
           W ++TL++YL  PKK+
Sbjct: 68  WEENTLYDYLLTPKKH 83



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 22/41 (53%), Positives = 26/41 (63%)
 Frame = -3

Query: 511 TLSLNILRIPRNTSPGTKMVFAGLKKANERADLIAYLKSAT 389
           TL   I  I    +P  KM F GLK+  +RADLIAYLK+AT
Sbjct: 106 TLGSVIPGITHKYTPA-KMGFNGLKQPQDRADLIAYLKNAT 145


>10_05_0043 +
           8503979-8504407,8506484-8506624,8506865-8506975,
           8507746-8508330
          Length = 421

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 583 EKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRNTSPGTKMVFAGLKKANERA 419
           + L RLQDS TP P+K  +      L+ N+   P  TS  T ++ A   K  + A
Sbjct: 304 KNLERLQDSITPKPVKPPSTPNTVALAANMAPDPVTTSVTTSVIPAAQTKKKKSA 358


>03_04_0184 - 18210875-18212065
          Length = 396

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 283 AEYITDHTDWAK*EVNSRNVMENASYGIFYYFKITW*QI*DR 408
           A+ I +H  WA  E  ++N   N S G  Y +K+ W  + D+
Sbjct: 258 ADLIAEHEIWAAVEPFAKNEAFNCSNGDLYKWKLLWPMLADQ 299


>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
          Length = 157

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 604 FG-PTLCLPPASTVWHWA 654
           FG PTLCLPP +T W  A
Sbjct: 21  FGMPTLCLPPIATYWSHA 38


>04_04_1582 - 34590698-34591199,34593849-34594690
          Length = 447

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -2

Query: 632 AGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWNDDTLFEYLENPKKY 474
           AGG  K G    G  G   G+      S+  + KGI W +D    +L   +KY
Sbjct: 238 AGGGKKGGGGGGGGGGGGHGEKGSAKSSEQERRKGIAWTEDEHRLFLLGLEKY 290


>11_03_0190 -
           11350497-11350832,11351926-11352303,11353897-11354181,
           11354515-11355327
          Length = 603

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 521 WNDDTLFEYLENPKKYIPWNQDG 453
           WND+   + L N KK IP  +DG
Sbjct: 277 WNDEDCVKILANCKKAIPTREDG 299


>10_08_0223 - 15986763-15987575
          Length = 270

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 629 GGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 516
           GG    G   +G +G  +G  AG  Y ++    G TWN
Sbjct: 40  GGGGGGGGGTNGGWGSGSGAGAGAGYGESGGDSGNTWN 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,907,949
Number of Sequences: 37544
Number of extensions: 395957
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)