Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_L17
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 36 0.007
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 30 0.46
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 28 1.9
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 4.3
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 5.7
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 5.7
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 25 9.9
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 9.9
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 25 9.9
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 35.9 bits (79), Expect = 0.007
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 9/60 (15%)
Frame = -2
Query: 814 EEKDVQYCYTPSRKDIGAAMGTMR--GCIMVL-------VKEHEDYKDLYEEVKSEIKLL 662
E+ +V Y YT S++ +G A T R C+M++ + + E+YK+ YEE+ E+ L
Sbjct: 93 EDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEEYKESYEEIIKEVPAL 152
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 29.9 bits (64), Expect = 0.46
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = -2
Query: 814 EEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKL 665
E+K+V Y + PS+ +G A G R I + +E DL ++++ IKL
Sbjct: 71 EDKNVPYVFVPSKAALGRACGVSRPVISASITTNE-ASDLLPQIQA-IKL 118
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = -1
Query: 260 TYFLPNMPE----HTTHMGVMCHYYGNQDIFTILKILSLF 153
++FL N+PE H T M MC +GN + ++K LS++
Sbjct: 1760 SFFLKNVPEITVQHQTEMLKMCSLFGNSE-DVMIKQLSIY 1798
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 448 LHVTLQNIKLLXCIFLSGLVFNSHYGIIIL*CTKNSKPILLQE 576
+HVTL K L ++L G+ S ++ T++S+P +L E
Sbjct: 510 IHVTLNPSKALTTVYLVGVPLQSATICVVSLPTEDSQPHVLHE 552
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 557 FEFFVHYNIIIP*WLLNTRPD-KNIHXSNFIFCNVTCNYF 441
++FF H+ I++P W ++ + + ++ FC++ N F
Sbjct: 690 WKFFTHFFIVLPTWPVHDKDNLVDLMRDTLDFCDMLINIF 729
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 5.7
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Frame = -1
Query: 323 SIFYGIYS*H*CG*LKKQF*KTYF---LPNMPEH----TTHMG-VMCHYYGNQDIFTILK 168
++F G Y H L K K YF L PE TT V+C Y GN IF ++
Sbjct: 203 AVFEGEYYVHIQDELPKTKVKNYFRTYLRQKPEELFIFTTKFSIVLCAYMGNSQIFPLVS 262
Query: 167 ILSLFE 150
+ FE
Sbjct: 263 SKNCFE 268
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 644 YLQWMTEQFYFTFNFLVQIFIILMFFNKYH 733
++ W+ Y+ F + IF+I +F++ +H
Sbjct: 129 WMVWLIRILYWIFVAVACIFVISLFYSLFH 158
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 332 SSTDNFGQSVIKNLLKI-YFSFLXXXXXXXNTICQIL*SNYMSHYKI*SYLXVYFYQ 499
S T+ + +NL+ + Y + L +C ++ Y SH I VY YQ
Sbjct: 610 SGTNEAANYIARNLISLTYDASLAELTSLEQMLCILMKDGYFSHLVITKLWQVYSYQ 666
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = -2
Query: 784 PSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEE 686
PS+KD+ GT+R I+VLV + +D++ L +E
Sbjct: 47 PSQKDLFILNGTVRPGIIVLVND-QDWELLEKE 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,989
Number of Sequences: 5004
Number of extensions: 71661
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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