Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_L17
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 37 0.023
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 36 0.039
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 33 0.28
05_07_0276 + 28899378-28899953,28900010-28901242 31 1.5
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 30 2.6
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 30 2.6
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687... 29 3.4
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095... 29 3.4
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 29 3.4
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 29 6.0
03_02_0681 + 10358224-10359006,10359162-10359272,10360445-10360648 29 6.0
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 36.7 bits (81), Expect = 0.023
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -2
Query: 814 EEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIK 668
EE ++ Y Y PS++D+ A T R VLV ++ EEVK ++K
Sbjct: 84 EEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGEINEEVKEKLK 132
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 35.9 bits (79), Expect = 0.039
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -2
Query: 814 EEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIK 668
EE ++ Y Y PS++D+ A T R VLV +L E+VK ++K
Sbjct: 84 EEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGELEEDVKEKLK 132
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = -2
Query: 772 DIGAAMGTMRGCIMVLVKEHEDYKDLYEEVKSEIKLLGH 656
++G+A+G +R LVKE+ D K E++KS+I+ L H
Sbjct: 113 ELGSAVGRLRDKEEHLVKEYRDLKLEIEQIKSDIQSLRH 151
>05_07_0276 + 28899378-28899953,28900010-28901242
Length = 602
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 345 LSVLLQSQHILWYL*LALMWIVKET-VLKNLFFAKYARTHHTHGSNVSLLWKP 190
L + L H+LW++ +ALM +V +LK +F+ + R H V+ + P
Sbjct: 249 LHISLDVNHVLWWVSVALMALVSAIYLLKVVFYFEAVRREFHHPIRVNFFFAP 301
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 814 EEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE--DYKDLYEEVKSEIKLL 662
E+K+V Y + PS++ +G A G R I V +E + +D +K I+ L
Sbjct: 72 EDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLRDPINNLKVAIEKL 124
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 626 IRILFIYLQWMTEQFYFTFNFLVQIFIILM 715
I + FI QFY+ F FL +FIIL+
Sbjct: 459 IELFFILTSIWLHQFYYIFGFLFLVFIILI 488
>09_06_0252 +
21867179-21867283,21868362-21868526,21868621-21868730,
21868802-21868904,21868998-21869110,21869204-21869357,
21869476-21870633
Length = 635
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 626 IRILFIYLQWMTEQFYFTFNFLVQIFIILM 715
I + FI QFY+ F FL +F+IL+
Sbjct: 509 IELFFILTSIWLHQFYYIFGFLFLVFVILI 538
>06_03_0508 -
21607706-21608863,21608943-21609090,21609411-21609523,
21609612-21609705,21609841-21609950,21610093-21610257,
21611660-21611800
Length = 642
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 626 IRILFIYLQWMTEQFYFTFNFLVQIFIILM 715
I + FI QFY+ F FL +FIIL+
Sbjct: 516 IELFFILTSIWLNQFYYIFGFLFIVFIILI 545
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 814 EEKDVQYCYTPSRKDIGAAMGTMRGCIMVLVKEHE 710
E+K+V Y + PS++ +G A G R I V +E
Sbjct: 74 EDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE 108
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 632 ILFIYLQWMTEQFYFTFNFLVQIFIILMFFNKYHD 736
I I + W+ FNFL I+I+ + KY D
Sbjct: 124 IKVILILWVVSYIGMLFNFLTLIYIVPPLYEKYQD 158
>03_02_0681 + 10358224-10359006,10359162-10359272,10360445-10360648
Length = 365
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 446 YFTGS-DILCLHCLIQXLEKKNKFSISF**HFVQNCQYYSNLSI 318
Y GS D+LCL C + + + N+FS V C+ +S+ SI
Sbjct: 268 YNEGSGDLLCLGCSVAYIYRVNRFSYEAPNEGVCGCERFSSSSI 311
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,336,774
Number of Sequences: 37544
Number of extensions: 372046
Number of successful extensions: 762
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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