Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L17
         (827 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    25   2.2  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   2.8  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   3.8  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   6.6  

>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 827 YRRXRGEGRPILLHS 783
           YR  RG+GRP +LH+
Sbjct: 398 YRSSRGQGRPKMLHA 412


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 825 PPXARRRTSNTVTLQVGRISVPPWVQCEDASW 730
           P  A+RR    V   + R + P W +  D  W
Sbjct: 778 PQVAKRRLLAAVAESIIRYAAPVWSEATDLQW 809


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
            transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 491  NIHXSNFIFCNVTCNYFTGSDILCLHCLIQXLEKKNKF 378
            NIH      C V    FT  D +  HC ++  E +++F
Sbjct: 916  NIHRPQSHECPVCGQKFTRRDNMKAHCKVKHPELRDRF 953


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 825 PPXARRRTSNTVTLQVGRISVPPWVQCEDASW 730
           P  A+RR    V+  + R   P W +  D  W
Sbjct: 775 PRVAKRRLLAGVSEAIIRYGAPIWAEATDRQW 806


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 836,102
Number of Sequences: 2352
Number of extensions: 17487
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)