Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L15
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0191 + 7642942-7642944,7643405-7643513,7643578-7643886,764...   150   1e-36
08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799     31   1.1  
08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783     31   1.1  
08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917     30   1.9  
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894...    30   1.9  
06_02_0169 - 12535102-12536062,12536949-12537646                       29   3.3  
02_05_0563 + 29998291-29998753,29999256-29999468,29999550-299996...    28   7.7  

>02_02_0191 +
           7642942-7642944,7643405-7643513,7643578-7643886,
           7644697-7644839
          Length = 187

 Score =  150 bits (364), Expect = 1e-36
 Identities = 74/182 (40%), Positives = 114/182 (62%), Gaps = 15/182 (8%)
 Frame = -3

Query: 598 YHSTLTDYSQTVG--NLAILPLRTSFRGPAPT-------SSDI------ELDIIDEALNY 464
           YHS+  D +         +LPL+T  RGPAP        ++D+      + DI+DEA+ +
Sbjct: 3   YHSSFVDDTGITKACGCPLLPLKTHIRGPAPAFDQEPCQAADLCRAITDKADIVDEAITF 62

Query: 463 FKANVFFRFYEIKSDADRVLIYLTLYVSECLKRLQKCSSKNQGQQEMYMLAISKFDIPGE 284
           F+ANVFF+ + +KS AD++LIYLT Y++  LKRL+ C +   G + +  L + K  +PGE
Sbjct: 63  FRANVFFKNFNVKSPADKLLIYLTFYINIALKRLEGCRTLAVGTKAIINLGLEKVPVPGE 122

Query: 283 PGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTRVCEKVFATEDGKPSKWWLCFSRRKF 104
           PGFP   ++  P SQ+E++L+R YL+Q+R ET  R+    +   +G P+KWWL F++RKF
Sbjct: 123 PGFPFPGLFTLPQSQEEAELLRNYLKQIREETSGRLLNCAYRA-NGTPNKWWLAFAKRKF 181

Query: 103 MD 98
           M+
Sbjct: 182 MN 183


>08_02_0354 + 16159825-16160192,16160408-16160600,16160794-16160799
          Length = 188

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
 Frame = -3

Query: 358 KCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTR 179
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPIGFGQMYVHDWLLTTGTS 88

Query: 178 VCEKV------FATEDGKPSKWWLCFSRRKFMDKSLAG 83
             E V      F  + G+ +  W       F D S AG
Sbjct: 89  ANENVVGRLQGFHLQAGQTTTSWYMAHTMVFSDGSFAG 126


>08_02_0338 + 15916813-15917180,15917396-15917588,15917778-15917783
          Length = 188

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
 Frame = -3

Query: 358 KCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTR 179
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPIGFGQMYVHDWLLTTGTS 88

Query: 178 VCEKV------FATEDGKPSKWWLCFSRRKFMDKSLAG 83
             E V      F  + G+ +  W       F D S AG
Sbjct: 89  ANENVVGRLQGFHLQAGQTTTSWYMAHTMVFSDGSFAG 126


>08_02_0334 + 15867947-15868314,15868530-15868722,15868912-15868917
          Length = 188

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
 Frame = -3

Query: 358 KCSSKNQGQQEMYMLAISKFDIPGEPGFPLNSVYARPTSQQESDLMRQYLQQLRHETGTR 179
           KCS +N+    MY+        P  PG P  + Y    S +     + Y+      TGT 
Sbjct: 34  KCSQENETSLHMYL-----HQFPALPGVPNRNEYGVINSTEPVGFGQMYVHDWLLTTGTS 88

Query: 178 VCEKV------FATEDGKPSKWWLCFSRRKFMDKSLAG 83
             E V      F  + G+ +  W       F D S AG
Sbjct: 89  ANENVVGRLQGFHLQAGQTTTSWYMAHTIVFTDGSFAG 126


>07_01_1032 -
           8947594-8947769,8947885-8948601,8948973-8949049,
           8949264-8949655,8949746-8950002,8950234-8950921
          Length = 768

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 274 PLNSVYARPTSQQESDLMRQY-LQQLRHETGTRVCEKVFATEDGKPSKWWLCFSRRKF 104
           P+ ++  R TSQ+ES  +R Y L   +    TR+ E  F T+ GK ++  +  SR +F
Sbjct: 147 PIANLLRRATSQRESPFLRDYNLAVAKAPVQTRI-ETGFFTKKGKQAREAIGESRARF 203


>06_02_0169 - 12535102-12536062,12536949-12537646
          Length = 552

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 17  FYSXTFRSSQLQFFKILFPCPGXSQRFIHKFPSGKAEPPLAWFSIFSGKYFLA 175
           +YS T   SQ+  ++ LFP PG    F   F   K +  +A  S   G YF+A
Sbjct: 310 YYSSTLFQSQI--YRPLFPAPGLINAFQEAFNVAKFQAVIAVASTIPG-YFVA 359


>02_05_0563 +
           29998291-29998753,29999256-29999468,29999550-29999667,
           30000227-30000355,30000438-30000810,30000890-30001147,
           30001192-30001227
          Length = 529

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = -1

Query: 180 ECARKYLPLKMENQASGGSAFPEGNLWINLWLXPGQGKRILKN 52
           +C    LP+     +  G+A P+ N + ++ + P +G+ +LK+
Sbjct: 108 DCVYSLLPMVPIALSDPGTALPDANSYFSISIHPVEGRCVLKH 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,577,243
Number of Sequences: 37544
Number of extensions: 359803
Number of successful extensions: 920
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)