Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L11
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase pro...    29   2.3  
U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase pro...    29   2.3  
U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase prot...    29   2.3  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    28   7.1  
Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U28412-2|AAL56625.1|  501|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF000261-2|AAB52925.1|  313|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase
           protein 2, isoform c protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -2

Query: 415 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 236
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  + +TK+ 
Sbjct: 155 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 214

Query: 235 YWEDKTLFIE 206
            W    +F E
Sbjct: 215 LWSAGCIFAE 224


>U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase
           protein 2, isoform b protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -2

Query: 415 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 236
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  + +TK+ 
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249

Query: 235 YWEDKTLFIE 206
            W    +F E
Sbjct: 250 LWSAGCIFAE 259


>U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase protein
           2, isoform a protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = -2

Query: 415 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 236
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  + +TK+ 
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249

Query: 235 YWEDKTLFIE 206
            W    +F E
Sbjct: 250 LWSAGCIFAE 259


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
 Frame = +3

Query: 507 PIPIVN---AILKK*FTS-----QNMYARATI-VTTIQYIIFRNQTFKTIEAVD*IIKRX 659
           P+PI N   A++ K  +      Q   AR+ + VTT+ Y +  N+TF  + AV+  +   
Sbjct: 515 PVPITNQSFAVMNKMASRRKIRLQKSEARSRMFVTTVSYPVIVNETFMGVAAVNIPLTEV 574

Query: 660 TQRNH 674
            Q++H
Sbjct: 575 AQKSH 579


>Z72501-1|CAA96582.1|  584|Caenorhabditis elegans Hypothetical
           protein C04C11.2 protein.
          Length = 584

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -2

Query: 427 FLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASS 296
           F+R+   A  V+E +F + H Y     +T +   +GH + G ++
Sbjct: 120 FIRYFIRASLVQEDEFEKIHEYYVKKAFTLVSPSEGHIVTGEAA 163


>U28412-2|AAL56625.1|  501|Caenorhabditis elegans Hypothetical
           protein T19C3.1 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 653 FYNSIHRFNCFKGLISEYNVLYSSD 579
           ++  IHRF CF  +++E  V Y  D
Sbjct: 6   YFIQIHRFLCFSQILNEMTVSYQLD 30


>AF067937-4|AAF99911.2|  352|Caenorhabditis elegans Hypothetical
           protein F22F7.6 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 532 RIAFTIGI-GRLFQKKCGINDSTTXYGFCTTQDVDIFLRHMNNARYVRELD 383
           R  +T  +   +F    GI  + T Y   T    + +   +  ARYVRE+D
Sbjct: 286 RAGYTFHVPSHVFDVHEGIKHTNTIYSKATIAHQEAYAMDIAGARYVREMD 336


>AF000261-2|AAB52925.1|  313|Caenorhabditis elegans Hypothetical
           protein F19B10.5 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 159 CHDKTSXMWTQLHYSRVFQELIRNLXVQKKLSIGFNL 49
           CH K S +W QL+YS   +        Q+  ++GF++
Sbjct: 148 CH-KLSALWFQLYYSHKAERTAERTEPQQTENLGFSI 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,458,981
Number of Sequences: 27780
Number of extensions: 329538
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)