Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_L08
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 188 9e-49
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 34 0.022
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.030
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 29 0.48
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.64
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ... 28 1.1
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.0
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 2.6
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.4
SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr ... 27 3.4
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 26 4.5
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.5
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 26 4.5
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 26 6.0
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 7.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 7.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 7.9
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.9
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 7.9
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.9
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 7.9
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1... 25 7.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 7.9
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 25 7.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 7.9
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 7.9
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.9
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 7.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 7.9
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 188 bits (457), Expect = 9e-49
Identities = 99/224 (44%), Positives = 133/224 (59%), Gaps = 5/224 (2%)
Frame = -3
Query: 698 VAEIQAVVVPCGITASSSADERQAXMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 519
+A +Q+VVVPCGIT ++ ER C L + L AA +R E D R Y+PG+KF+HW
Sbjct: 496 IALVQSVVVPCGITNKTTDQERNEIEGFCSKLADRLNAADIRTEADLRA-YTPGYKFSHW 554
Query: 518 ELKGVPVRVELGPKDIAKGTVVAVQRLTGDKMVFKRDSVAKDIVELLDKTHAQMFERATK 339
E+KGVP+R+E GP D K V AV+R T +K+ +++ K + +LL K M+E A
Sbjct: 555 EMKGVPLRLEYGPNDAKKNQVTAVRRDTFEKIPVPLNNLEKGVSDLLAKIQTNMYETAKA 614
Query: 338 DRDARLSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKNDSAR-TEDDPNVDVKAPAM 162
+RDA + V +W DF AL +KNI++ P+C CE IK +SAR D D KAP+M
Sbjct: 615 ERDAHVVKVKEWADFVPALNKKNIVMIPWCNTTECEKEIKKNSARQVNGDEPEDEKAPSM 674
Query: 161 GAKSLCIPFEPPRQ----LSESDRCIHPACKNKPKFITLFGRSY 42
GAKSLCIP E P + + +C C N K LFGRSY
Sbjct: 675 GAKSLCIPLEQPSGEDAIIEGTTKC--AGCGNLAKVWGLFGRSY 716
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 33.9 bits (74), Expect = 0.022
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Frame = +1
Query: 112 SDNCLGGSNGMHSDFAPMAGALTSTLGSSSVL-ALSFLMLSSHDISPQNGASKMFFSSRA 288
S + S + P + A +S+L S++ + + L+S ++ A+ SS +
Sbjct: 156 SSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATS-SSLS 214
Query: 289 AVKSSHLVTDDNRASRSFVALSNICACVLSRSSTMSFATE--SRLKTILSPVRRCTATTV 462
+ +S+ T + AS S + ++ A S SST+S +T S T + T+++
Sbjct: 215 STAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSA 274
Query: 463 PF-AISLGPNSTLTGTPFNS 519
+ SL P+ST + TP +S
Sbjct: 275 QYNTSSLLPSSTPSSTPLSS 294
Score = 32.7 bits (71), Expect = 0.052
Identities = 34/114 (29%), Positives = 51/114 (44%)
Frame = +1
Query: 178 TSTLGSSSVLALSFLMLSSHDISPQNGASKMFFSSRAAVKSSHLVTDDNRASRSFVALSN 357
TS+ SSS+ + S SS S + AS S+ +A +S +T + S S + S
Sbjct: 67 TSSASSSSLTSSS--AASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSST 124
Query: 358 ICACVLSRSSTMSFATESRLKTILSPVRRCTATTVPFAISLGPNSTLTGTPFNS 519
+ + S S T S S +I S ++TT S NST + TP +S
Sbjct: 125 TSSSLASSSITSSSLASS---SITSSSLASSSTTSSSLASSSTNSTTSATPTSS 175
Score = 25.8 bits (54), Expect = 6.0
Identities = 29/124 (23%), Positives = 47/124 (37%)
Frame = +1
Query: 148 SDFAPMAGALTSTLGSSSVLALSFLMLSSHDISPQNGASKMFFSSRAAVKSSHLVTDDNR 327
S P+ + ++T +S+ S ++ + P + S SS + ++ +
Sbjct: 250 SSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLT 309
Query: 328 ASRSFVALSNICACVLSRSSTMSFATESRLKTILSPVRRCTATTVPFAISLGPNSTLTGT 507
+ S S + S SS S S T LS V TAT+ NST T T
Sbjct: 310 SVNSTTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNST-TAT 368
Query: 508 PFNS 519
+S
Sbjct: 369 SASS 372
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.5 bits (73), Expect = 0.030
Identities = 38/138 (27%), Positives = 64/138 (46%)
Frame = +1
Query: 106 SDSDNCLGGSNGMHSDFAPMAGALTSTLGSSSVLALSFLMLSSHDISPQNGASKMFFSSR 285
S S + L S+ + S +P + + +STL SSS+ S SS S + S SS
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSS-SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSST 262
Query: 286 AAVKSSHLVTDDNRASRSFVALSNICACVLSRSSTMSFATESRLKTILSPVRRCTATTVP 465
A+ SS + +S S S + +S SS+ S + S TI S ++++
Sbjct: 263 ASSSSSSSSIISSSSSSSSSPTST--SSTISSSSSSSSSPTSTSSTISS----SSSSSSS 316
Query: 466 FAISLGPNSTLTGTPFNS 519
F+ +L +S + + F+S
Sbjct: 317 FSSTLSSSSMSSSSSFSS 334
Score = 25.4 bits (53), Expect = 7.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +1
Query: 148 SDFAPMAGALTSTLGSS-SVLALSFLMLSSHDISPQNGASKMFFSSRAAVKSSHLVT-DD 321
S +P + + +ST SS S + S + SS S S SSR A SSH +
Sbjct: 346 SSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSS 405
Query: 322 NRASRSFVALSNICACVLSRSSTMS 396
+++S S + S + +ST S
Sbjct: 406 HKSSSSSKSSSAPVSSAFYHNSTSS 430
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 29.5 bits (63), Expect = 0.48
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 133 SNGMHSDFAPMAGALTSTLG-SSSVLALSFLMLSSHDISPQNGASKMFFSSRAAVKSSHL 309
S+ + S AG+ TS + SSS +ALS ++ S+ + G S SS AA SS
Sbjct: 201 SSSVASSSEISAGSATSYVPTSSSSIALSSVVASASVSAANKGVSTPAVSSAAA--SSSA 258
Query: 310 VTDDNRASRSFVALSNICACVLSRSSTMSFATES 411
V +S + VA S+ + S S++ S + S
Sbjct: 259 VVSSVVSSATSVAASSTISSATSSSASASPTSSS 292
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.64
Identities = 35/150 (23%), Positives = 61/150 (40%)
Frame = +1
Query: 79 FLQAGCMQRSDSDNCLGGSNGMHSDFAPMAGALTSTLGSSSVLALSFLMLSSHDISPQNG 258
F A S + + S+ + S P +L + SSS+++ S +LSS +
Sbjct: 603 FSSASTSSPSSISSSISSSSTILSSPTPSTSSLM--ISSSSIISGSSSILSSSISTIPIS 660
Query: 259 ASKMFFSSRAAVKSSHLVTDDNRASRSFVALSNICACVLSRSSTMSFATESRLKTILSPV 438
+S +SS SS LV+ + S +++ + + SS++ + L I
Sbjct: 661 SSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSS 720
Query: 439 RRCTATTVPFAISLGPNSTLTGTPFNSQWL 528
TA + AI NS+ T +S L
Sbjct: 721 LSLTAMSSSSAIPTSVNSSTLITASSSNTL 750
>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -1
Query: 253 FVERYRVKITLRTTVQGQKTTLTLMSRHQPWVRNHCAYHLNLQDNCLNLTAAYTRLVKIS 74
F RYR K T G ++S P++ N + L C+N+T+A+ +
Sbjct: 395 FPIRYRSKCAAVAT-SGNWLGNFMVSFFTPFISNSIGFKLGYIYACINMTSAFQIFLMAK 453
Query: 73 PSSLRYLEEVTE 38
+ LEEV E
Sbjct: 454 ETKGLTLEEVNE 465
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 2.0
Identities = 29/119 (24%), Positives = 52/119 (43%)
Frame = +1
Query: 106 SDSDNCLGGSNGMHSDFAPMAGALTSTLGSSSVLALSFLMLSSHDISPQNGASKMFFSSR 285
S S + S+ S + + + +S+ SSS + ++ SSH S + +S SSR
Sbjct: 175 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSS-SSR 233
Query: 286 AAVKSSHLVTDDNRASRSFVALSNICACVLSRSSTMSFATESRLKTILSPVRRCTATTV 462
+ SS + T +S +F++ + S SST S S L+ + T++
Sbjct: 234 PSSSSSFITT---MSSSTFISTVTVTPS-SSSSSTSSEVPSSTAALALNASKASNHTSL 288
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -3
Query: 557 RDNYSPGWKFNHWELKGVPVRVELGPKDIAKGTVVAVQRLTGDKMVFKRDSV 402
R N + G+K EL G P + +G + +G + R +G++ +DS+
Sbjct: 365 RQNRAFGYKMRDAELIGYPFVIVVGSRFQEEGICEIIVRSSGERYKLDKDSL 416
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.4
Identities = 28/120 (23%), Positives = 51/120 (42%)
Frame = +1
Query: 148 SDFAPMAGALTSTLGSSSVLALSFLMLSSHDISPQNGASKMFFSSRAAVKSSHLVTDDNR 327
S F P + +++L SSSVL S + +S ++ + + F S S++L T +
Sbjct: 226 SSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPS----YSTNLTTTGST 281
Query: 328 ASRSFVALSNICACVLSRSSTMSFATESRLKTILSPVRRCTATTVPFAISLGPNSTLTGT 507
+ +S+ + S SS + + S + + S T T S+ T TG+
Sbjct: 282 TTTGSATVSS--SPFYSNSSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGS 339
>SPAC186.06 |||human MAWBP homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 184
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 445 CTATTVPFAISLGPNSTLTGTPFNSQWLNFQP 540
C+ PF + +GP + + P + LN P
Sbjct: 38 CSQCNTPFCVDVGPRNAIIQLPNGADVLNLNP 69
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 4.5
Identities = 23/105 (21%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Frame = -3
Query: 482 PKDIAKGTVVAVQRLTGDKMVFKRDSV--AKDIVEL--LDKTHAQMFERAT---KDRDAR 324
P +I KG ++ L G VF++DSV A+ ++E +++ +++ ++ + A
Sbjct: 601 PIEIMKGHIIVCGDLDGRIRVFRQDSVFAARKLIEKKNIERKNSETLSNSSFFPQALKAH 660
Query: 323 LSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKNDSARTEDDP 189
++S++ + + +KN +I+ +N ND + D+P
Sbjct: 661 MNSISSPKRHFSLRHKKN------ASQITNNENNGNDDIKKGDEP 699
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 638 RPPSWTPLCRTEPPRPVS 691
RPP W P T P PVS
Sbjct: 48 RPPGWQPPVNTGPTSPVS 65
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 4.5
Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Frame = +1
Query: 196 SSVLALSFLMLSSHDISPQNGASKMFFSSRAAVKSSHLVTDDNRASRSFVALSNICAC-- 369
+S+ A+S S + S AS F + S V++ AS +FVA + +C
Sbjct: 114 ASMTAIS-TFTSGKEASYAIQASPSTFLPDSTTTSGSQVSNAVEASSTFVADTTSTSCNP 172
Query: 370 -----VLSRSSTMSFATESRLKTILSPVRRCTATTVPFAISLGPNSTLTGTPFN 516
V + ST + I++ T TTV + S+ +TLTGTP N
Sbjct: 173 ATVLIVTTSGSTSTSCPPPTTILIVTVPTTTTTTTVGYPGSV--TTTLTGTPSN 224
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 509 GVPVRVELGPKDIAKGTVVAVQRLTGDKMVFKRDSVAKDIVELLDKTHAQMFERATKD 336
GVP+ E+G D+ + + R+T + V A ++ KT+ ERA D
Sbjct: 337 GVPMPEEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDD 394
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 166 PWVRNHCAYHLNLQDNCLNLTAAYTRLVKISPS 68
P RNHCA + + AAYTRL+K S S
Sbjct: 456 PVTRNHCAIEILI-------AAAYTRLIKRSKS 481
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 7.9
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +1
Query: 175 LTSTLGSSSVLALSFLMLSSHDISPQNGASKMFFSSRAAVKSSHLVTDDNR--ASRSFVA 348
+ S+L +SS F LSS +S +N S S KSS L T S S V+
Sbjct: 494 VNSSLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSS-LSTPSTTIPTSNSSVS 552
Query: 349 LSNICACVLSRSSTMSFATESRLKTILSPVRRCTATTVPFAISLGPNST 495
L + ++S S T + T + T + + SL P+S+
Sbjct: 553 LQTSSSLIISSPIISSSLTATSTST-PALTHSITPSNTSYTSSLIPSSS 600
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 95
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = -3
Query: 218 NDSARTEDDPNVDVKAPAMGAKSLCIPFEPPRQLSESDRCIHP 90
N + +D + KAP GAK+ P P ++ D + P
Sbjct: 13 NPANEKSNDSKSEAKAPKKGAKTKSTPSRPKPTNNQDDLFLDP 55
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -3
Query: 383 LLDKTHAQMFERATKDRDARLSSVTKWEDFTAALEEKNILL 261
LL +T+ + K+RD +L + +W+ +E + +LL
Sbjct: 663 LLSRTN-DILSTLRKERDEKLIPIHEWQQLQERIEHQTLLL 702
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = +1
Query: 301 SHLVTDDNRASRSFV 345
SHLVT NRAS SFV
Sbjct: 277 SHLVTYSNRASPSFV 291
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 406 LLQKTLLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
+LQK +LI + KC Q +++ +GYH+ G
Sbjct: 585 VLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKG 619
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,806
Number of Sequences: 5004
Number of extensions: 58882
Number of successful extensions: 230
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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