Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_L08
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427... 124 5e-29
07_01_0465 + 3513296-3513631,3514386-3514442,3515196-3515306,351... 82 5e-16
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634... 34 0.094
12_01_0878 - 8420348-8420580,8420728-8420890 31 0.67
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907... 31 1.2
09_06_0346 + 22435164-22435491,22435990-22436114,22436402-224365... 30 2.0
07_03_1754 - 29226516-29226974,29227012-29228430 30 2.0
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 29 3.5
01_06_0850 + 32444475-32444722,32445159-32445312,32445763-324461... 28 6.2
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364... 28 8.2
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 28 8.2
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937... 28 8.2
>12_02_0178 -
14941342-14941391,14941909-14942002,14942498-14942716,
14943409-14943492,14943783-14944067,14944349-14944501,
14944618-14944740,14945429-14945495,14946122-14946309,
14947134-14947250,14947720-14947812,14948377-14948459,
14948565-14948610
Length = 533
Score = 124 bits (300), Expect = 5e-29
Identities = 84/219 (38%), Positives = 119/219 (54%), Gaps = 28/219 (12%)
Frame = -3
Query: 698 VAEIQAVVVPCGITASSSADERQAXMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 519
VA +Q +V+P + A ++ CK V L AG+RA+ D R+NYSPGWK++HW
Sbjct: 310 VAPLQVIVIPVPYKDVDTT----AIVNECKKTVETLEKAGIRADLDTRENYSPGWKYSHW 365
Query: 518 ELKGVPVRVELGPKDIA--KGTVVAVQ-------RLTGDK---------MVFKRDSVAK- 396
E+KGVP+R+E+GPKD+A +GT V + +K V +RD+ AK
Sbjct: 366 EMKGVPLRIEIGPKDMANNQGTFVIMHFPENCYIFTVREKELVVVVVMARVVRRDNGAKA 425
Query: 395 -----DIVE----LLDKTHAQMFERATKDRDARLSSVTKWEDFTAALEEKNILLAPFCGE 243
D+VE LLD+ +FE A + RDA L V W++F AL +K ++LAP+C E
Sbjct: 426 DIPTADLVEKVNGLLDEVQKNLFETAKQKRDACLKVVNTWDEFIVALNDKKLILAPWCDE 485
Query: 242 ISCEDNIKNDSARTEDDPNVDVKAPAMGAKSLCIPFEPP 126
E ++K ART+ D AK+LC PFE P
Sbjct: 486 EEVEKDVK---ARTKGDLG--------AAKTLCTPFEQP 513
>07_01_0465 +
3513296-3513631,3514386-3514442,3515196-3515306,
3515466-3515552,3515627-3515740,3515850-3516056,
3516291-3516428,3516691-3516852,3516939-3517138,
3517429-3517554,3517644-3517785
Length = 559
Score = 81.8 bits (193), Expect = 5e-16
Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 9/228 (3%)
Frame = -3
Query: 698 VAEIQAVVVPCGITASSSADERQAXMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 519
+A IQ V+VP DE+ A M++ ++ N L AG+R + D + +PGWKFN +
Sbjct: 346 IAPIQVVIVPIW----KKGDEKSAVMEAVSSVQNTLKEAGIRVKVDDSELRTPGWKFNFY 401
Query: 518 ELKGVPVRVELGPKDIAKGTVVAVQRLTGDKM-----VFKRDSVAKDIVE-LLDKTHAQM 357
E+KGVP+R+E+GP+D+ +VV +R K V S+ D ++ L + A +
Sbjct: 402 EMKGVPIRLEIGPRDVTNKSVVISRRDIPGKQGKEFGVSMDPSILVDHIKGRLVEIQASL 461
Query: 356 FERATKDRDARLSSVTKWEDFTAALEEKNILLAPFCGEIS---CEDNIKNDSARTEDDPN 186
++A RD + SS FT + NI+ GE+ E D
Sbjct: 462 LQKAIAFRDRQTSSELNGALFTFS----NIVDVSSYGELKEAIAEGKWARGPWSASDADE 517
Query: 185 VDVKAPAMGAKSLCIPFEPPRQLSESDRCIHPACKNKPKFITLFGRSY 42
+ VK A C PFE P + +C N + + +F +SY
Sbjct: 518 LKVKEET-SATIRCFPFEQP---EGAKKCFMTG--NPAEEVAIFAKSY 559
>05_05_0303 -
23958989-23960563,23962628-23962864,23963250-23963449,
23964088-23964250,23964348-23964554,23964667-23964798
Length = 837
Score = 34.3 bits (75), Expect = 0.094
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = -3
Query: 380 LDKTHAQMFERATKDRDAR-LSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKNDSAR 204
+D+ A F+R D+ A LS+VT+ + ++ ++++I +NIKNDS+R
Sbjct: 766 IDEPSASDFQRQFSDKSASTLSTVTESDIISSVADQEDI-----------SNNIKNDSSR 814
Query: 203 TEDDPNVDVKAPAMGAKSLCI 141
+ P + P MG+ +C+
Sbjct: 815 EYESPELPT-IPTMGSDIICV 834
>12_01_0878 - 8420348-8420580,8420728-8420890
Length = 131
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -3
Query: 551 NYSPGWKFNHWELKGVPVRVELGPKDIAKGTVVAV-QRLTGDKMVFKRDSVAK 396
+++ G ++ W+L+G V +E+ +D+ + T+ +V + +M +K VAK
Sbjct: 56 SWTTGLEWRQWQLRGAAVMLEVEEEDLERLTMTSVDDEVVAMRMAWKTTKVAK 108
>05_07_0340 +
29389314-29389627,29389966-29390112,29390654-29390789,
29391098-29391199,29391801-29391920,29392033-29392113,
29392578-29392918,29393069-29393314,29394195-29394519,
29395123-29395356,29395437-29395691
Length = 766
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 498 YWNPLQLPVVKLPARRIVIPVVAF 569
YWN L +P V L RR+++ V F
Sbjct: 356 YWNNLSIPFVSLTVRRLIVAVAFF 379
>09_06_0346 +
22435164-22435491,22435990-22436114,22436402-22436514,
22436919-22437023,22437147-22437531,22437645-22437776,
22437980-22438450,22438550-22439278,22439579-22439767
Length = 858
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -3
Query: 452 AVQRLTGDKMVFKRDSVAKDIVELLDKTH 366
A ++ +K+V +++SVA IVEL+D+ H
Sbjct: 148 AFPKVQAEKLVIEKNSVANGIVELIDQHH 176
>07_03_1754 - 29226516-29226974,29227012-29228430
Length = 625
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 346 ALSNICACVLSRSSTMSFATESRLKTILSPVRRCTATTVPFAISLGPNSTLTGTPFNSQW 525
A SN C V S M+ + L T L P+RRC ++ P L P+ T+ + F +
Sbjct: 69 ASSNHCFFV-SPLDDMTIISLPPLDTPLEPLRRCAISSSP----LSPDCTIVFSTFMDTY 123
Query: 526 LNF-QPGE 546
L + +PGE
Sbjct: 124 LAYTRPGE 131
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -3
Query: 614 CKALVNDLLAAGVRAEGDYRDNYSPGWKFNHWELKGVPVRVELGPKDIAKGTVVAVQRLT 435
C + ++L + G+RAE + + + E K VP+ +GPK++ T+ R +
Sbjct: 625 CNEVASELKSKGIRAEVCHGERLPK--LIRNAETKKVPLMAVVGPKEVQARTLTIRSRHS 682
Query: 434 GD 429
G+
Sbjct: 683 GE 684
>01_06_0850 +
32444475-32444722,32445159-32445312,32445763-32446160,
32446476-32446571,32446650-32446722,32446854-32447136,
32447225-32447556,32447642-32447912,32448502-32448783,
32449106-32449518
Length = 849
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 391 LLNSLIKHTRKCLKGQRKIEMLGYHLLLNG 302
L NSL+K T L+G+R I++ Y L+NG
Sbjct: 99 LQNSLLKRT---LRGERYIKLYSYRYLING 125
>04_03_0548 -
17035394-17035749,17035761-17036295,17036325-17036458,
17037053-17037134
Length = 368
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 178 SRHQPWVRNHCAYHLNLQDNCLNLTAAYTRLVKISPSSLRYLEEVTE 38
SR +PW + C +LQ + A ++++ SS+RYL + E
Sbjct: 303 SRLRPWSKCKCHAQRHLQQAHFTVLAPTPMRLQLANSSVRYLAGIAE 349
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 430 SPVRRCTATTVPFAISLGPNSTLTGTPFNSQW 525
SP + VP A S P+S++T + F SQW
Sbjct: 249 SPSQPLPLPPVPVASSSIPSSSITSSQFQSQW 280
>01_05_0217 -
19390788-19391048,19392205-19392438,19393474-19393798,
19395781-19396121,19396422-19396502,19396640-19396759,
19397028-19397129,19397811-19397946,19398508-19398654,
19399024-19399337
Length = 686
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 498 YWNPLQLPVVKLPARRIVIPVVAF 569
YW+ L +P V L RR++I V F
Sbjct: 356 YWDNLSIPFVYLTIRRLIIAVAFF 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,874,960
Number of Sequences: 37544
Number of extensions: 386517
Number of successful extensions: 1349
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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