Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L08
         (700 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ370040-1|ABD18601.1|  121|Anopheles gambiae putative TIL domai...    26   1.3  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    24   4.0  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   9.2  

>DQ370040-1|ABD18601.1|  121|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 121

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 257 PFCGEISCEDNIKNDSA-RTEDDPNVDVKAPAMGAKS-LCIP 138
           P CG+ +C +  KNDSA R   +P    +   +  KS  C+P
Sbjct: 72  PACGDRTCTNQRKNDSACRRSCNPGCFCRGGYVRNKSNRCVP 113


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 174 LDINVRVVFCPCTVVLNVIFTRYLSTKWC 260
           +D+ V +V       L  +F RY+++ WC
Sbjct: 496 MDLLVTIVSTLILDFLRALFVRYMNSCWC 524


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 200 LSLHCRS*CYLHTISLHKMVQV 265
           +SL+  S C+L  ++LH++ Q+
Sbjct: 184 ISLNSSSSCFLDVLNLHELYQL 205


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,936
Number of Sequences: 2352
Number of extensions: 16167
Number of successful extensions: 27
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)