Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L08
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna syn...   194   7e-50
U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna syn...    92   3e-19
AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical...    29   2.4  
U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical p...    29   4.2  
AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z74030-1|CAA98440.3|  266|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z29095-9|CAJ76941.1|  331|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z29095-8|CAJ76940.1|  371|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U00037-3|AAA50660.1|  581|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform a protein.
          Length = 581

 Score =  194 bits (472), Expect = 7e-50
 Identities = 96/219 (43%), Positives = 131/219 (59%)
 Frame = -3

Query: 698 VAEIQAVVVPCGITASSSADERQAXMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 519
           VA +Q +VVP G       + +Q+  D+   +  DL+A GV+AE D R+NY+ GWKFNHW
Sbjct: 374 VAAVQVIVVPVGF----KTENKQSLFDAVDKVTKDLVADGVKAEHDLRENYNAGWKFNHW 429

Query: 518 ELKGVPVRVELGPKDIAKGTVVAVQRLTGDKMVFKRDSVAKDIVELLDKTHAQMFERATK 339
           ELKGVP+R E+GP D+AK  V AV R  G+K     + ++K +  LLD+ H  M+ +   
Sbjct: 430 ELKGVPIRFEVGPNDLAKNQVTAVIRHNGEKKQLSLEGLSKTVKSLLDEIHTAMYNKVLA 489

Query: 338 DRDARLSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKNDSARTEDDPNVDVKAPAMG 159
            RD+ L S T  E+F   L+EK I+L+PFCG   CE+ IK  S R       D +   MG
Sbjct: 490 QRDSHLKSTTCIEEFKKLLDEKCIILSPFCGRPDCEEEIKKASTRE------DGEGAQMG 543

Query: 158 AKSLCIPFEPPRQLSESDRCIHPACKNKPKFITLFGRSY 42
           AK+LCIP + P+Q   S +C+ P+C    K   LFGRSY
Sbjct: 544 AKTLCIPLDQPKQELPS-KCLFPSCTYNAKAFALFGRSY 581


>U00037-4|AAU20840.1|  454|Caenorhabditis elegans Prolyl trna
           synthetase protein1, isoform b protein.
          Length = 454

 Score = 92.3 bits (219), Expect = 3e-19
 Identities = 40/78 (51%), Positives = 54/78 (69%)
 Frame = -3

Query: 698 VAEIQAVVVPCGITASSSADERQAXMDSCKALVNDLLAAGVRAEGDYRDNYSPGWKFNHW 519
           VA +Q +VVP G       + +Q+  D+   +  DL+A GV+AE D R+NY+ GWKFNHW
Sbjct: 374 VAAVQVIVVPVGF----KTENKQSLFDAVDKVTKDLVADGVKAEHDLRENYNAGWKFNHW 429

Query: 518 ELKGVPVRVELGPKDIAK 465
           ELKGVP+R E+GP D+AK
Sbjct: 430 ELKGVPIRFEVGPNDLAK 447


>AL117195-25|CAB55036.1| 1048|Caenorhabditis elegans Hypothetical
            protein Y57A10A.31 protein.
          Length = 1048

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/87 (21%), Positives = 34/87 (39%)
 Frame = -3

Query: 392  IVELLDKTHAQMFERATKDRDARLSSVTKWEDFTAALEEKNILLAPFCGEISCEDNIKND 213
            ++ELL+    ++F+R T++R+A           TA     N      CG + C   I   
Sbjct: 775  LIELLETLSNEVFKRETRNREAEEIPNLVCPICTAETGISNDFYRLECGHVMCRTCINTQ 834

Query: 212  SARTEDDPNVDVKAPAMGAKSLCIPFE 132
                 D+   +++    G   +  P E
Sbjct: 835  IRSRIDEQQFNIRCEIDGCHRVLTPAE 861


>U97196-11|AAB52464.1|  273|Caenorhabditis elegans Hypothetical
           protein B0207.11 protein.
          Length = 273

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 277 KKTFYLHHFVERYRVKITLRTTVQGQKTT 191
           +K + L+H V+ Y+V+I L  T+Q Q+ T
Sbjct: 213 RKHYSLNHLVKFYKVRILLPDTIQKQQLT 241


>AF003132-1|AAB54133.3|  798|Caenorhabditis elegans Hypothetical
           protein F37E3.1 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 431 DKMVFKRDSVAKDIVELLDKTHAQMFERATKDRDARL-SSVTKWEDFTAALEE 276
           +K+  + + V KDI EL +KT  ++ E   ++ D ++    TK E F   LE+
Sbjct: 641 EKLTRQINVVEKDIKELTEKTENKIKEEDDEESDIKMDEDETKEEKFKQDLED 693


>Z74030-1|CAA98440.3|  266|Caenorhabditis elegans Hypothetical
           protein D1054.1 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 357 HLRVCFIKEFNNVFCNRITFEDHLITGETLYCY 455
           H+ +  +K++ N+  N+    DHLI+     CY
Sbjct: 127 HISITKLKKWENIMINKFDSRDHLISCLLASCY 159


>AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical
           protein F59D6.7 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 380 LDKTHAQMFERATKDRDARLSSVTKWEDFTAALEEKNI 267
           LDK   +  E A +DRD ++S    +EDF  A+E+ +I
Sbjct: 170 LDKIADKTLEEADQDRDGKIS----FEDFCRAMEKTDI 203


>Z29095-9|CAJ76941.1|  331|Caenorhabditis elegans Hypothetical
           protein R10E11.6b protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 479 KDIAKGTVVAVQRLTGDKMVFKRDSVAKDIVELLDKTHA-QMFERATKDRDARLSSVTKW 303
           KD  K  +  +         FK  S A D +E + K+   Q+  ++TK+ +   +   KW
Sbjct: 252 KDSKKEVIQEISETEKGSAYFKSLSKAFDTLERVCKSAGVQLSVQSTKEAEYCRNLRRKW 311

Query: 302 EDFTAALEEKNI 267
           E F     E+N+
Sbjct: 312 ETFMDTTPEQNV 323


>Z29095-8|CAJ76940.1|  371|Caenorhabditis elegans Hypothetical
           protein R10E11.6a protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 479 KDIAKGTVVAVQRLTGDKMVFKRDSVAKDIVELLDKTHA-QMFERATKDRDARLSSVTKW 303
           KD  K  +  +         FK  S A D +E + K+   Q+  ++TK+ +   +   KW
Sbjct: 252 KDSKKEVIQEISETEKGSAYFKSLSKAFDTLERVCKSAGVQLSVQSTKEAEYCRNLRRKW 311

Query: 302 EDFTAALEEKNI 267
           E F     E+N+
Sbjct: 312 ETFMDTTPEQNV 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,054
Number of Sequences: 27780
Number of extensions: 336377
Number of successful extensions: 1185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)