Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L07
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +2

Query: 461 QDIL*LTRILNYTIFLKQHHDFKHIAHTTICHSQEANKLITNYI*CLDQNIYRPREESTP 640
           + I+ L RI++   FL Q  D   I  +     QE  KL T Y     ++  +P  E   
Sbjct: 48  RSIISLLRIIDKKCFLNQDVDVNQIKFSL----QEVGKLSTKY----PKSHQKPGNEVKV 99

Query: 641 KYNCHLYNL--IPN--EDNGQNSLNQSN*K 718
           K N     +  +PN  E+N  N LNQ N K
Sbjct: 100 KTNAEFREIETVPNPDEENIDNLLNQLNLK 129


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = +2

Query: 461 QDIL*LTRILNYTIFLKQHHDFKHIAHTTICHSQEANKLITNYI*CLDQNIYRPREESTP 640
           + I+ L RI++   FL Q  D   I  +     QE  KL T Y     ++  +P  E   
Sbjct: 48  RSIISLLRIIDKKCFLNQDVDVNQIKFSL----QEVGKLSTKY----PKSHQKPGNEVKV 99

Query: 641 KYNCHLYNL--IPN--EDNGQNSLNQSN*K 718
           K N     +  +PN  E+N  N LNQ N K
Sbjct: 100 KTNAEFREIETVPNPDEENIDNLLNQLNLK 129


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +1

Query: 304 MHHSKNFLNNITCNFHIHLSCKQYMNNTDNK**AEKHMKIISIIKQFNVLLFSRHFIID 480
           + H + + N +  + H H     Y N+   +  A++ +K+++I+K     L + H IID
Sbjct: 326 LRHGEQYTNQLASDLHNH-----YKNDLHLEQYAQRVLKMMAIVKSLQKHLMNIHKIID 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,999,839
Number of Sequences: 27780
Number of extensions: 336179
Number of successful extensions: 679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)