Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L04
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...   164   1e-41
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    76   7e-15
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    63   4e-11
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   5.5  

>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score =  164 bits (399), Expect = 1e-41
 Identities = 87/253 (34%), Positives = 139/253 (54%)
 Frame = -1

Query: 813 MTFIAPNITAIVGASTAAKILGVAGGLXKLSKMPACNVLPXGQQKKTLSGXSQATAXPHT 634
           ++ +APN++A+VG++TAA ++G+AGGL +L K PACN+   G+++ T  G +        
Sbjct: 236 ISVVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGINNPAVSGDY 295

Query: 633 GFIYFSQIVQDTTPELRYKAAKLVSTKLTLAARVDACHESTDGHIGRQLRENIEKKLDKL 454
           GF+Y S+IVQ T P++R +A ++ + K+ LAAR+D+ HE  DG  G   R+ +E+K++KL
Sbjct: 296 GFLYMSEIVQKTPPDVRKQAIRMTAAKVALAARIDSIHEYPDGSFGISARKEVERKIEKL 355

Query: 453 QEXXXXXXXXXXXXPIEQSXXXXXXXXXXXXXXRYAMTEFRKNANRLNFADIEDDAYQED 274
            E            P ++               +YA+TE R+  NR+ F   E + +  D
Sbjct: 356 LEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTELRRLQNRVAFGKEEAEVFNFD 415

Query: 273 LGYTRGTIGKSSTGRIRLPQIDEKTKVRISKTXXXXXXXXXQYGGATSIRRQVSGTASSV 94
                G +G+   G+IR   ID +TK+R+ K              A       SG  SS+
Sbjct: 416 ETEGLGMLGQEGEGKIRAVSIDSRTKLRLPKARKAQLQSM-----AQKNPLAASGLQSSL 470

Query: 93  AFTPLQGLEIVNP 55
           +FTP+QG+E+VNP
Sbjct: 471 SFTPIQGIELVNP 483


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 75.8 bits (178), Expect = 7e-15
 Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 2/123 (1%)
 Frame = -1

Query: 813 MTFIAPNITAIVGASTAAKILGVAGGLXKLSKMPACNVLPXGQQKKTLSGXSQATAXPHT 634
           M  IAPN+TA+VG    A+++  AG L  L+K PA  +   G +K          + P  
Sbjct: 280 MQAIAPNLTALVGELVGARLIAHAGSLMNLAKQPASTIQILGAEKALFRALKTKHSTPKY 339

Query: 633 GFIYFSQIVQDTTPELRYKAAKLVSTKLTLAARVDAC--HESTDGHIGRQLRENIEKKLD 460
           G IY + +V     + + K A++++TK  L+ RVDA    ++T+G+IG + R  +E +L 
Sbjct: 340 GLIYHASLVGQANSKNKGKIARVLATKAALSLRVDALSDKDTTNGNIGLENRIRVENRLR 399

Query: 459 KLQ 451
            L+
Sbjct: 400 SLE 402


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 31/118 (26%), Positives = 58/118 (49%)
 Frame = -1

Query: 813 MTFIAPNITAIVGASTAAKILGVAGGLXKLSKMPACNVLPXGQQKKTLSGXSQATAXPHT 634
           M  +APN+  ++G    A+++  AG L  LSK PA  V   G +K            P  
Sbjct: 292 MNVVAPNLAELIGEMVGARLISHAGSLTNLSKCPASTVQILGAEKALFRALKTRGNTPKY 351

Query: 633 GFIYFSQIVQDTTPELRYKAAKLVSTKLTLAARVDACHESTDGHIGRQLRENIEKKLD 460
           G IY S  +     + + + ++ ++ K ++A+R+D   ++     G+ LR  +E++L+
Sbjct: 352 GIIYHSSFIGKAGAKNKGRISRFLANKCSIASRIDNFSDAPTTAFGQVLRRQVEERLN 409


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 134 PVSEDKYLVLRLLWPSRLYRVWK 66
           P+ + K L+L LLW S L  +WK
Sbjct: 59  PLFDQKSLILYLLWFSTLTLLWK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,755
Number of Sequences: 5004
Number of extensions: 46274
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)