Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_L02
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 32 2e-05
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 31 0.23
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 29 0.69
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 29 0.91
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 26 6.4
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 6.4
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 25 8.5
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 25 8.5
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 31.9 bits (69), Expect(2) = 2e-05
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Frame = -3
Query: 428 LRKELVEQGILDPEDLPPLTNPADDEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEM 249
LR L + GIL D+ + DDEI A ++ L V EN + L+ + +EM
Sbjct: 394 LRYTLKQLGILYDGDVD-WSKRQDDEISATLRSLNARLKVVSDENEKMRNALLQMLPEEM 452
Query: 248 IRLNLXKQLDQVDLECIDIY-KKMVAAK-QKXRPVTKK 141
+D +D + Y K+ + K +K R VT K
Sbjct: 453 AFQEFQNVMDDLDKQIEQAYVKRNRSLKVKKKRIVTDK 490
Score = 31.5 bits (68), Expect(2) = 2e-05
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = -3
Query: 722 IPPLGKHYSEVWADEHLAEDQNAXXXXXXXXXXXPDASHARKKLEKSSESMITGPLTQRL 543
IPPLG+ Y ++ ++ + + A + A + + SE + GPLT+RL
Sbjct: 268 IPPLGERYYDLTPEDEMT-NLCANSIYQNLQTSAQGSLEAFNEADTVSEEVRCGPLTERL 326
Query: 542 VSALMEENVMSYE--IPDIKVKMVSTTKSGYKNS 447
+++L+ + E P I V + T SG + S
Sbjct: 327 MASLIPCYTQNDEEQKPSIAVGEFAETDSGSEKS 360
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 30.7 bits (66), Expect = 0.23
Identities = 26/104 (25%), Positives = 51/104 (49%)
Frame = -3
Query: 605 ARKKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSGYKNSLTLXKCL 426
A K+ E S S ++ L ++L S +E +S + +++ K + Y++S L
Sbjct: 933 ANKQTEISYLSDLSSTLEKKLSSIKKDEQTISSKYKELE-KDYLNIMADYQHSSQHLSNL 991
Query: 425 RKELVEQGILDPEDLPPLTNPADDEILAEIKKCQTELTAVRKEN 294
K + E+ L+ +L DDE+L + + T++ +R+EN
Sbjct: 992 EKAINEKN-LNIRELNEKLMRLDDELLLKQRSYDTKVQELREEN 1034
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 29.1 bits (62), Expect = 0.69
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -3
Query: 377 PLTNPADDEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLXKQLDQ-VDLEC 201
P + +DDE+ + + E + + N + K L K+EM+ NL + DQ VDLE
Sbjct: 256 PRASGSDDELDYDEEFADDEEAPIMEGNEEDNKKLKDKIKKEMLTANLFGEADQDVDLEE 315
Query: 200 IDIYKKMVAAKQKXRPVTKKEKEDAWKAINE 108
+ + K+ R + EK A+++ E
Sbjct: 316 ENDRQMSREGKKLQRYLKLLEKNLAYESDEE 346
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 28.7 bits (61), Expect = 0.91
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = -3
Query: 356 DEILAEIKKCQTELTAVRKENCRNLKNLIGLCKQEMIRLNLXKQLDQVDLECIDIYKKMV 177
D+ L+E +KC+TE + + N +GL +++ L + +CID + +
Sbjct: 474 DQWLSEAEKCETEGAVITAQAIINTCLGVGLDEEDQFDTWLDDAQSFIARKCIDCARAVF 533
Query: 176 AAKQKXRPVTKK 141
A + P ++K
Sbjct: 534 AFSLRVYPKSEK 545
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 398 LDPEDLPPLTNPADDEILAE-IKKCQTELTAVRKEN 294
+D +DL AD+E+L E I+KC EL+ R EN
Sbjct: 1 MDVDDLIYACRAADEELLDEIIEKCPQELSR-RDEN 35
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 197 QYILDPLDPVAXSD 238
QY+L PLDP+A S+
Sbjct: 504 QYVLTPLDPIAASE 517
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 599 KKLEKSSESMITGPLTQRLVSALMEENVMSYEIPDIKVKMVSTTKSGYK 453
K +K E ++ G L + ++E+ E+P+ +K+V TKS K
Sbjct: 144 KTADKKDEIVVQGDLNYDIFDFILEK---FKEVPEDNIKIVEDTKSKKK 189
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -3
Query: 254 EMIRLNLXKQLDQVDLECIDIYKKMVAAKQKXRPVTKK 141
+M+ ++L KQ++Q+ C+ +Y K+ A + V K+
Sbjct: 98 KMVFMSLAKQIEQMLKFCMMVYSKLCEAFETTLKVAKE 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,226
Number of Sequences: 5004
Number of extensions: 45764
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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