Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_L02
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-8|CAA92189.2|  289|Caenorhabditis elegans Hypothetical pr...    33   0.28 
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical...    30   2.0  
AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical ...    27   2.6  

>Z68118-8|CAA92189.2|  289|Caenorhabditis elegans Hypothetical
           protein R01E6.7 protein.
          Length = 289

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = -3

Query: 461 GYKNSLTLXKCLRKELVEQGILDPEDLPPLTNPADDEILAEIKKCQTELTAVRKENCR-- 288
           GYK +L+     +K+  E G L     P    P+  ++++ +   QT+ +  R +NC   
Sbjct: 88  GYKQALSSCHSSKKQKAE-GTLPILGAPAQNFPSPVQLISALGYLQTQCSLSRSKNCSSD 146

Query: 287 NLKNLIGLCKQEMIRLNLXKQLDQ 216
           ++ N++  C+++M  L    Q D+
Sbjct: 147 HVHNIMAQCEEQMKPLAGYPQYDR 170


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 612 ISCS*EARKVIRKHDNWTFDTKISLCSYGREC 517
           +SC     +VI+  DN  FDT++S C +   C
Sbjct: 370 LSCDNGVGRVIQCADNLVFDTRVSACEFAAIC 401


>AF040645-14|AAB94979.1|  779|Caenorhabditis elegans Hypothetical
           protein F52C6.14 protein.
          Length = 779

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = -3

Query: 374 LTNPADDEILAEIKKCQTE---LTAVRKENCRNLKNLIGLCKQEMIRLNLXKQLDQVDLE 204
           L+NPA   I+ E KK   E   L  +  ++ RNLK+ +GL ++++ +++L     +V LE
Sbjct: 179 LSNPA---IVEEAKKSSNEFSKLFCLLPQDIRNLKDSLGLNQEQLDKVDLESVKKRVQLE 235


>AF040661-3|AAG24226.1|  187|Caenorhabditis elegans Hypothetical
           protein W10G11.1 protein.
          Length = 187

 Score = 26.6 bits (56), Expect(2) = 2.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 506 EIPDIKVKMVSTTKSGYKNSLTLXKCLRKELVE 408
           EIPD KVKM    K   +N      C++KE+ E
Sbjct: 127 EIPD-KVKMAEIQKVACENFFGKHGCMQKEITE 158



 Score = 21.4 bits (43), Expect(2) = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 329 CQTELTAVRKENCRNLKNLIGLCKQE 252
           C  E+    K+N   L  +IG CK E
Sbjct: 160 CGAEMWTGFKKNNLALNTIIGACKLE 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,043
Number of Sequences: 27780
Number of extensions: 255154
Number of successful extensions: 695
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)