Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_K24
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 219 3e-58
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 219 3e-58
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.43
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.57
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.75
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 4.0
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 4.0
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.3
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 5.3
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 26 5.3
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac... 26 5.3
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.2
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.2
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 9.2
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 219 bits (535), Expect = 3e-58
Identities = 100/173 (57%), Positives = 132/173 (76%)
Frame = -1
Query: 583 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 404
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 403 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 224
R+RK A+R GRH G+GKR+GTA ARMP +W R + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 223 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 65
H+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q +ARR + K AR+RR
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRR 173
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 219 bits (535), Expect = 3e-58
Identities = 100/173 (57%), Positives = 132/173 (76%)
Frame = -1
Query: 583 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 404
M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 403 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 224
R+RK A+R GRH G+GKR+GTA ARMP +W R + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 223 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 65
H+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q +ARR + K AR+RR
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRR 173
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.43
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 381 SVFLRTRAREWTATGFLMTRPSLIILRMFC 470
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 440 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 529
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 461 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 556
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = -1
Query: 613 LVCVGSH-RVRMSSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 455
+V VG + ++ S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 601 GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 488
G +++ K K L +S+ W D NE+NE+
Sbjct: 9 GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 304 VPSVAYAHWQYLFSYQS 354
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 144 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 236
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 16 SEGLQQFLLLGGNTFLDGACVPPLLYCGGP 105
SE + L+L G L G CVP LL GP
Sbjct: 142 SENVTPALILSG-IMLGGVCVPELLKKAGP 170
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 217 LYMKAKGNVFK--NKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRRRGTYCRQ 44
L+++ VF+ NK+ ++ RK + +L + + + A+KR R T Q
Sbjct: 20 LFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQ 79
Query: 43 EGGTAADL 20
G A+L
Sbjct: 80 RGIVGANL 87
>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
L24|Schizosaccharomyces pombe|chr 3|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 217 LYMKAKGNVFK--NKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRRRGTYCRQ 44
L+++ VF+ NK+ ++ RK + +L + + + A+KR R T Q
Sbjct: 20 LFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVKHQ 79
Query: 43 EGGTAADL 20
G A+L
Sbjct: 80 RGIVGANL 87
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 9.2
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = -1
Query: 523 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 377
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 376 RRKGR 362
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 469 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 353
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 187 KNKRVLMEYIHRKKAEKART-KMLSDQAEARRNKVKEARK 71
K V+ + HRK A A L+DQ++A +N+V + RK
Sbjct: 224 KGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTKIRK 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,362
Number of Sequences: 5004
Number of extensions: 56528
Number of successful extensions: 198
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -