Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_K24
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   235   1e-62
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.53 
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical...    31   0.92 
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical...    30   1.2  
AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83105-4|CAB05486.1|  280|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  235 bits (576), Expect = 1e-62
 Identities = 107/173 (61%), Positives = 137/173 (79%)
 Frame = -1

Query: 583 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 404
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 403 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHLY 224
            R R+  EARRKGRH G+GKRRGTANARMP+K LW              R AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 223 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 65
           H LY++AKGN FKNK+ L+EYI +KK E  R K L+DQA+ARR+K KE+RKRR
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRR 173


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 487  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 353
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
            protein Y39B6A.30 protein.
          Length = 1408

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 244  KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRR 65
            K+++    +   K K    +NK  +     R KAE+ + K+  ++ +A   K+K A + R
Sbjct: 938  KVEKEKVKAEEEKVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKAAEEER 997

Query: 64   R 62
            R
Sbjct: 998  R 998


>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
            protein Y39B6A.18 protein.
          Length = 1352

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -1

Query: 208  KAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRRR 62
            K K    +NK  +     R KAE+ + K+  ++ +A   K+K A + RR
Sbjct: 911  KVKVEKERNKEKVKAEEERLKAEEEKVKIEKEKVKAEEQKIKSAEEERR 959


>AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical
           protein F33D11.2 protein.
          Length = 408

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 22/32 (68%)
 Frame = -1

Query: 151 KKAEKARTKMLSDQAEARRNKVKEARKRRRGT 56
           KKAEK +++++  QAEA++N  K    R++ T
Sbjct: 132 KKAEKVKSELVVPQAEAQKNTPKSVVARKKET 163


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 475 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 362
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical
           protein C13F10.7 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -1

Query: 211 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEARKRRRGTYCRQE 41
           +K K    K K   +E   RKK  K + +   D  ++  +  +E RKR++    ++E
Sbjct: 135 LKKKAKKEKKKAKKLEKKERKKERKEKRRRRDDSDDSSDSDEEEDRKRKKSKESKKE 191


>Z83105-4|CAB05486.1|  280|Caenorhabditis elegans Hypothetical
           protein F14H3.4 protein.
          Length = 280

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 157 HRKKAEKARTKMLSDQAEARRNK-VKEARKRRRGTYCRQEG 38
           H+K  E+   K   D +E   ++ +KE RKRRR     +EG
Sbjct: 227 HKKTLEQLEEKEAGDVSETVMDRMIKELRKRRRDDEDDEEG 267


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +1

Query: 247 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 405
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>Z66519-6|CAA91374.3|  394|Caenorhabditis elegans Hypothetical
           protein B0334.6 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 25/95 (26%), Positives = 36/95 (37%)
 Frame = +3

Query: 39  PSWRQYVPRRRLRASFTLLRRASAWSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*S 218
           PSW   +      + F +        LSI  LAFS  F   YS    L++ TL   F  S
Sbjct: 77  PSWNLLIALAVCDSLFLIFATLDVTPLSIPSLAFSTSFNHFYSRIV-LYIRTLASTFYKS 135

Query: 219 EWYRCLSIFLAVLYFRSNFLRTLCLCTHSSFCGIR 323
                 S+ + V +    +L  +C      +C  R
Sbjct: 136 ------SVLIVVAFNIERYLCVVCPLNSHRWCTSR 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,806
Number of Sequences: 27780
Number of extensions: 340835
Number of successful extensions: 1136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)