Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_K23
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 41 3e-04
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 36 0.010
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 31 0.16
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 31 0.27
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 29 1.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 27 4.5
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 27 4.5
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 5.9
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||... 26 5.9
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 5.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 7.8
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 40.7 bits (91), Expect = 3e-04
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Frame = -2
Query: 691 KRMRLVRSQESEEHHEARLTACQERQARFRATETSAQQESRLSSHRSRMIATRIRENRE- 515
K+++L + +E + RL QA +A E Q+E+R R+ + ++ +E
Sbjct: 602 KQLKLAKEEERQRREAERLA----EQAAQKALEAKRQEEARKKREEQRLKREQEKKQQEL 657
Query: 514 QREARLSIDRENLMHNRVNLRLQ-TDRKSRLSSQRVRIANGRSQGILEERKARLTADRE 341
+R+ R ++ ++ + Q DR+ QR+R + ILEERK R D+E
Sbjct: 658 ERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLR--EEEEKRILEERKRREKLDKE 714
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 35.5 bits (78), Expect = 0.010
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 11/149 (7%)
Frame = -2
Query: 727 KRSNLSQCSRNA----KRMRLVRSQESEEHHEARLTACQER-QARFRATETSAQQESRLS 563
+R NL RNA K++RL++ QES H ++ CQ + A E + + +L
Sbjct: 186 ERLNLDTIKRNALVELKKLRLIKQQESLRH---QVMHCQPHLRTIVNAVERMSCRRPKLV 242
Query: 562 SHRSRMIATRIRENREQREARLSIDRENLM-----HNR-VNLRLQTDRKSRLSSQRVRIA 401
+R+ R+ R RE RL + + + H R +N+R + + + R +A
Sbjct: 243 PQATRLTEVLERQQRSDRERRLKQKQCDYLQTVCAHGREINVRTKNAQARAQKANRAVLA 302
Query: 400 NGRSQGILEERKARLTADREGHALSLESE 314
E+R+A A + AL E
Sbjct: 303 YHSHIEKEEQRRAERNAKQRLQALKENDE 331
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 31.5 bits (68), Expect = 0.16
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = -2
Query: 727 KRSNLSQCSRNAKRMRLVRSQESEEHHEARLTACQERQARFRATETSAQQESRLSSHRSR 548
K N+ R +R + + +E EA A + + E Q+E++ + R
Sbjct: 765 KAKNVIDAERERQRKEIFEQKLAEAIREAEEEAARAAEEEANR-ELHEQEEAQKRAIEER 823
Query: 547 MIATRIRENREQREARLSIDRENLMHNRVNLRLQTDRKSRLSSQRVRI-ANGRSQG 383
A R + REQRE ++R+ + + + + +++R I A+ S G
Sbjct: 824 TRAAREAKEREQREMAEKLERQRRIQQERDEEISRKLAEKAAARRANIGASSPSPG 879
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 30.7 bits (66), Expect = 0.27
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = -2
Query: 658 EEHHEARLTACQERQARFRATETSAQQESRLSSHRSRMIATRIRENREQREARLSIDREN 479
EE +L A ERQA + + HR+ ++ RIRE + A+ S D E
Sbjct: 28 EEILSQKLVAAIERQA-------ALDDKYATEVHRNEALSERIRELEAKLSAKKSFDEEL 80
Query: 478 LMHNRVNLRLQ-TDRKSR-LSSQRVRIAN 398
+ + + +LQ T+ K R S++ R+ N
Sbjct: 81 VKFHNLEEKLQLTETKCRNAESEKSRVEN 109
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = -2
Query: 712 SQCSRNAKRMRLVRSQESEEHHEARLTACQERQARFRATETSAQQESRLSSHRSRMIATR 533
S+ +RN + SQE EE+ E + +R R T + +E L+ ++ ++
Sbjct: 102 SEHARNVSDSESITSQEEEEYEELEIDDA-DRDLFDRFLPTVSGEEGDLTEEKTTSLSDL 160
Query: 532 IRENREQREAR 500
I + + EAR
Sbjct: 161 IMQKINEAEAR 171
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 742 VRMPRKRSNLSQCSRNAKRMRLVRSQESEEHHEARLTACQERQAR 608
+R R + +R + R+R RSQ+ EE E +ER +R
Sbjct: 109 IRSVRSKPKYKPGTRRSTRLRNRRSQDEEESEEEHRPILRERTSR 153
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 625 QERQARFRATETSAQQESRLSSHRSRMIATRIRENREQREARL 497
Q QA+ A +E R + R M+ +RE +EQR L
Sbjct: 206 QNNQAQAAAAAAQNLREVREARQRLAMVMEHLRERQEQRNLEL 248
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 664 ESEEHHEARLTACQERQARFRATETSA-QQESRLSSHRSRMIATRIRENREQREAR 500
+S +H EA + + Q + A QES + H S M+ + ++ + R R
Sbjct: 61 QSSQHLEANVQSPVSSQTTYATPSAYAVPQESEIELHESEMVPQKPKKKKRSRRNR 116
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 697 NAKRMRLVRSQESEEHHEARLTACQERQARFRATETSAQQESRLSSH 557
++K ++ + E +E H A++ +ERQAR + QQ L +H
Sbjct: 1102 SSKIVQSLSDAEQQEQHLAKVRMAKERQARI-MEQFRMQQNKFLENH 1147
>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 476 EIFTINGQTCLTLFPVFPNSSGY 544
E+ +N Q CL ++P F N+ G+
Sbjct: 371 ELAELNIQNCLRIYPHFQNTGGF 393
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 5.9
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = -2
Query: 730 RKRSNLSQCSRNAKRMRLVRSQESEEHHEARLTACQERQARFRATETSAQQESR---LSS 560
R+RS + R+ R R R S EH+ A E Q ++ A+++++ +++
Sbjct: 199 RRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEEND-PELQRVIEESKRQAEEDAKRRNMAN 257
Query: 559 HRSRMIATRIRENREQREARLSIDRE 482
+ I+ ++E+ EAR RE
Sbjct: 258 DSEAELQKAIQLSKEEDEARQRHQRE 283
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 425 QAGFPISLKS*IHAIVHEIFTINGQTCLTLFPVFPNSSGYHSRTM*TQSRFLLSRSFCGT 604
Q+ F + +S I+ + + + G CLT P P+S + + T Q LL F GT
Sbjct: 44 QSTFVDTFRSFINDEYYTVIYLYGSPCLTSSPTSPDSCTFGNMTF--QWTSLLQDVFSGT 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,822
Number of Sequences: 5004
Number of extensions: 63131
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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