Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_K19
(560 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.04c |||guanyl-nucleotide exchange factor |Schizosaccharo... 52 6e-08
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 29 0.47
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 29 0.62
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 29 0.62
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 29 0.62
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 28 1.1
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 26 4.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 5.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 5.8
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 7.6
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 7.6
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 7.6
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 7.6
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 25 7.6
>SPBC4C3.04c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 100
Score = 52.0 bits (119), Expect = 6e-08
Identities = 24/90 (26%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = -1
Query: 299 NKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFYHVENMYTFE 120
+ L + C+ C S + + K + + + P M +++ + ET +F+ +++ + F+
Sbjct: 2 SNLRIVCQHCPSVVFNNKRPDVVKR----PTMSAMLHSETQEDLET-DDFFLLKDPFAFD 56
Query: 119 NIGFTHTV-DNHKYLSCADCDAGPVGYHDT 33
N+ + + +N+K L+CADC+ GP+GY+D+
Sbjct: 57 NVSVSKPLANNYKLLACADCEKGPLGYYDS 86
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 29.1 bits (62), Expect = 0.47
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = -1
Query: 377 QYIMAEMENDVSPIETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQ 198
Q ++E D P+ + E +N + +C SK+LD NYI + P +++
Sbjct: 328 QVFLSEYIGDKDPMTYDIALLDETNRNDIEADAYWCLSKLLDGIQDNYIHAQ---PGIRR 384
Query: 197 ASNNDREV 174
NN RE+
Sbjct: 385 QVNNLREL 392
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 28.7 bits (61), Expect = 0.62
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 246 FLIQNFRTAKFALHYEFVFSVFNIFPLL-RFDWRYIIFHF----SHYVLLINYFYTYNLK 410
FL+ T + + F F ++ R W+YIIF F +Y +++ Y YT L
Sbjct: 177 FLVYALLTLVYTPYTVFRMGFKKYFEMIFRHGWKYIIFAFFDVEGNYFVVLAYQYTNMLS 236
Query: 411 AS 416
AS
Sbjct: 237 AS 238
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.62
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 286 CNANFAVRKFWIRNHLIISLKRKIC 212
C AN+ RKF +R+ + + RKIC
Sbjct: 165 CTANYVARKFGVRSAMPEFIARKIC 189
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 28.7 bits (61), Expect = 0.62
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 315 IFPLLRFDWRYIIFHFSHYVLLIN 386
I+PL + ++YIIFH++ +L IN
Sbjct: 311 IYPLSKSSFQYIIFHYAAGLLFIN 334
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 27.9 bits (59), Expect = 1.1
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 314 VEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQ-QASNNDREVQNETIKEFYHV 141
V G N L F G L + I+ +D +Q A NND +++E I+ YHV
Sbjct: 180 VSMGINLLWGIITFIGISFLPESPRYLISVGRDEEALQIMAKNNDLPIEHEVIQTEYHV 238
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 4.4
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Frame = -2
Query: 364 LKWKMMYRQSKRSKGNMLKTEKTNS*CNANFAVRKFWIRNHL----IISLKRKICHLCSK 197
L W + R SK+ N + T K S A F FWI N + R +C +
Sbjct: 315 LFWSLDERFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFNPNDFYEIIRDVCQDMVE 374
Query: 196 PVTTIEKYRTR 164
V I++Y +
Sbjct: 375 SVNLIDQYTAK 385
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -1
Query: 335 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNET 162
E E+ E ED +N FC SK ++K Q+K +Q + D+ N T
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQ-DDVDQATDNNT 356
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = -1
Query: 335 ETEQREYVEDGKNKLVVQCKFCGSKILDKKSSNYIAQEKDLPLMQQASNNDREVQNET 162
E E+ E ED +N FC SK ++K Q+K +Q + D+ N T
Sbjct: 300 EEEEGEEKEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQ-DDVDQATDNNT 356
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 7.6
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = -1
Query: 224 EKDLPLMQQASNNDREVQNETIKEFYHVENMYTFENIGFTHTVDNHKYLSCADCDAGPVG 45
++ LPL ++ D EV E + E + F N H KYL DC G +
Sbjct: 80 DQSLPL-EKVIKKD-EVLREMLLELRKKYKCWIFTNAYIVHANRVLKYLGIEDCFDG-IT 136
Query: 44 YHDTNTR 24
Y D N +
Sbjct: 137 YCDYNAK 143
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 25.0 bits (52), Expect = 7.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 62 HNLHNSNIYDCQRCA*NLYFQMYTC 136
HN + SN+Y+C C + Y C
Sbjct: 174 HNEYESNLYECNACR-EIVIAGYVC 197
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +1
Query: 241 DDFLSKIFEPQNLHCTTSLFFPSSTYSLCSVSIGDTSFSIS 363
D S + P HC + + SS+ LC + G + S+S
Sbjct: 146 DMIYSHAWSPIASHCLIATAYRSSSIRLCDMQSGSYTHSLS 186
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -1
Query: 251 KKSSNYIAQEKDLPLMQQASNNDREVQNETIKEFYHVENMYTFEN 117
KK SN+++ K+ PL+ A ++ F H +M +N
Sbjct: 309 KKLSNFLSHSKEPPLLSTAHHSAYRPSKNIHSMFQHFNSMKKNKN 353
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = -1
Query: 206 MQQASNNDREVQNETIKEFYHVE-NMYTFENIGFTH-TVDNHKYLSCADCDAGPV 48
+++A+ +++QNET+K+F E N +IG + + C D A P+
Sbjct: 470 VRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPI 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,795
Number of Sequences: 5004
Number of extensions: 53572
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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