Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_K14
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 231 7e-62
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 36 0.009
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 30 0.44
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 28 1.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.1
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 27 4.1
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 5.5
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 9.5
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 25 9.5
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 25 9.5
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 25 9.5
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 25 9.5
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 25 9.5
SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1 |Sc... 25 9.5
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 231 bits (566), Expect = 7e-62
Identities = 118/241 (48%), Positives = 147/241 (60%)
Frame = -3
Query: 801 EKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKT 622
E+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KT
Sbjct: 74 ERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKT 133
Query: 621 SFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDS 442
SFFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD
Sbjct: 134 SFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQ 193
Query: 441 GTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXX 262
G +F+PEILD+ EDL + + + A+SL YPTI S HS+ N +KNL+
Sbjct: 194 GNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLAT 253
Query: 261 XXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLF 82
K F+ DPS F SD+DMGFGLF
Sbjct: 254 EYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLF 311
Query: 81 D 79
D
Sbjct: 312 D 312
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 35.5 bits (78), Expect = 0.009
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Frame = -3
Query: 798 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLG 634
KL + G VG +FT EV E+ VQ AR GA+AP + VIPA G
Sbjct: 91 KLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQI 149
Query: 633 PEKTSFF---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI-- 487
P + + L +PT + G + ++ D + G ++ + + LL + I
Sbjct: 150 PVEDDILLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITA 209
Query: 486 SPFSYGLV 463
+ F GL+
Sbjct: 210 AEFKVGLL 217
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.9 bits (64), Expect = 0.44
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 217 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 396
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 397 ILWFDVQNF 423
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 563 MISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAP 688
+IS P + L+GI AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 214 VLNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGT 393
V L D G + +C+ +D ++++T + +++S KS + N EL T
Sbjct: 1016 VNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELAT 1075
Query: 394 EI 399
E+
Sbjct: 1076 EL 1077
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 556 IVDDFNSTL*NLGRDRKSLEERGLLWTKAGVVGGNDD*QWG 678
IVD NS + R + L ++G+L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 629 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTXPTLPLMCGNSFS 802
+G PV + + G++ P AGAW L N L T ++ T G FS
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINTPHNPLGKIFS 195
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -2
Query: 676 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 542
P+ ++P H+PW E+ G F G +H+ H E
Sbjct: 183 PVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 227
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -2
Query: 676 PIVSRHSRPQHRPWSREDLFLPGSFYPYQDFKGYY*NHQRCTHLE 542
PI ++P H+PW E+ G F G +H+ H E
Sbjct: 295 PIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHEE 339
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 108 DDDMGFGLFD 79
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 108 DDDMGFGLFD 79
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 108 DDDMGFGLFD 79
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 108 DDDMGFGLFD 79
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 108 DDDMGFGLFD 79
D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109
>SPAC31G5.12c |maf1|n150|repressor of RNA polymerase III Maf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 556 IVDDFNSTL*NLGRDRKSL 612
+VD NSTL N+GR R S+
Sbjct: 98 VVDSVNSTLNNIGRGRLSV 116
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 108 DDDMGFGLFD 79
D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,857
Number of Sequences: 5004
Number of extensions: 58860
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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