Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_K04
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    82   8e-17
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    73   4e-14
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    40   4e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    29   0.60 
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    28   1.8  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    27   2.4  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   4.3  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   5.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   7.4  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    26   7.4  
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    25   9.8  

>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 82.2 bits (194), Expect = 8e-17
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 5/233 (2%)
 Frame = -3

Query: 751 RELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQN-EFRQLGQLYCEVK 575
           R+++  R ++ +    ++A GS+Y E  K K+ C+V  PR  P +   FR   +L CE +
Sbjct: 30  RDVDRCRKIYLKLGWATKAVGSSYFESEKIKIACTVSGPR--PSKTFAFRSSAKLNCEFR 87

Query: 574 FAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDG--SCX 401
            +PFS    R+ +V  VEEK+ S  +  A+ P++  H +P   IDV I ++E DG  +  
Sbjct: 88  LSPFSTS-VRQGHVQTVEEKSYSQMIEAAISPSILLHLYPKSSIDVYIQVIESDGALATL 146

Query: 400 XXXXXXXXXXXXXXAVPMFDIITSCSVAVIGN--KMFIDPTEIEEHIAKNSTEVNHGIIT 227
                          +   D++T  SV    N  + +IDP  ++E           G + 
Sbjct: 147 AAAISCASSAIADANIDCIDLVTGSSVLFNPNTDEYWIDPDYVDER-----ARAAKGSVV 201

Query: 226 MSVLSQLKQISDFTQIGSMDVECVTKVMEVLLKECEIIVPNIQRVLVVDVVKN 68
           M  ++ L  ++   + G+     ++ + E  +K  +     I   L+++  K+
Sbjct: 202 MGYMASLGHVTQVWERGTCSPSRLSFLTEKCIKNAKDTRLVINHALLLEKSKS 254


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 73.3 bits (172), Expect = 4e-14
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 1/225 (0%)
 Frame = -3

Query: 769 GKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFR-QLGQ 593
           G R DGR  +E R+   R  +     GSA++EL  TKV+C V  P E   +++ R     
Sbjct: 11  GLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTF 70

Query: 592 LYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHD 413
           +  E+  A FS    ++ +  D   +   +AL+   E  +    +P  QI V +++L+ D
Sbjct: 71  VNVEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDD 130

Query: 412 GSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEEHIAKNSTEVNHGI 233
           G+                 +P+ D +   +  ++ + M +D   +EE             
Sbjct: 131 GAVMASCINATTLALIDAGIPVKDFVCCSTAGIVESDMLLDLNSLEESAL--------SW 182

Query: 232 ITMSVLSQLKQISDFTQIGSMDVECVTKVMEVLLKECEIIVPNIQ 98
           +T++VL  +K++       SM ++ +  VM + +   E I   +Q
Sbjct: 183 LTVAVLGNIKKVVYMQLETSMHLDYLESVMNMAIAGSEHIYNTMQ 227


>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 28/109 (25%), Positives = 51/109 (46%)
 Frame = -3

Query: 808 TYDEQLKDLYDENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPRE 629
           T ++ L  L +++  R DGR ++E R +    + +S A GSA +   +   VC +     
Sbjct: 21  TPEQYLSHLLNQD-VRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIA 79

Query: 628 IPHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 482
            P +N   + G +   ++ +P  C  K +P  P    + +S  L Q L+
Sbjct: 80  EPFENSPNE-GWIVPNLELSPL-CSSKFKPGPPSDLAQVVSQELHQTLQ 126


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 766 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQ 617
           +++  R  NE+     + +  +    + Y   +K KV+  VFDPR+  H+
Sbjct: 36  RKRQKRNSNESSKSTVKRNSGTNGASTDYKNSQKEKVINPVFDPRKPAHE 85


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 406 MTRHVLRCILKHQSDSLGRSAYRQPVQEPAVKQQTRLSLLHQEH 537
           + +HV+RC L+   +   R A R  + EP ++  T   +L  +H
Sbjct: 220 LLKHVIRCYLRLSDNPRAREALRHCLPEP-LRDATFAQVLKDDH 262


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 742 NEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYCEVKFAP 566
           N +     R D+ +   GS  +E  +       F P  +   NEF+ + +L+C + + P
Sbjct: 388 NSSDLFLVRCDLYNVDHGSLKIEESRLG-----FPPPVVRMSNEFKDIAELFCRIPYMP 441


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 169  DVECVTKVMEVLLKECEIIVPNIQRVLVVDVVKNFELKKHLE 44
            D EC+T+V  +LLK C +I+  +     V + +   L + LE
Sbjct: 1293 DNECITRVYFLLLKACGLIMNGLNFEASVMLEEVISLTEKLE 1334


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = -3

Query: 223 SVLSQLKQISDFTQIGSMDVECVTKVMEVLLKECEIIVPNIQRVLVVDVVKNFELK 56
           S++ + K  ++  ++ S D     +V+EVL KE +I+         + +V NF+LK
Sbjct: 102 SLMQESKPSTETFELNSSDAG---RVLEVLNKELKIVTSKPSAPSKLVIVANFDLK 154


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -3

Query: 625 PHQNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCR 467
           P QN  R+L  L   +    F    +     PD E++A   +L++ L+P + R
Sbjct: 539 PLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQEHLQPYILR 591


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 5/32 (15%)
 Frame = -3

Query: 88  VVDVVKNFELKKHLEA-----ETKKREEILKK 8
           V D+++NFE K HL A     E KK E+ LKK
Sbjct: 464 VNDILRNFEEKPHLIAFDIIPELKKDEKELKK 495


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 763 RKDGRELNEARSMFARTDMVSQAKGSAYVE 674
           R DGR +++ R +  + D++    GSA V+
Sbjct: 23  RNDGRSIDQLRPLSGQVDVLPGTNGSARVK 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,586
Number of Sequences: 5004
Number of extensions: 55544
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)