Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_K04
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 109 2e-24
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 106 2e-23
09_02_0074 + 3905810-3905981,3906115-3906175,3906522-3906573,390... 67 2e-11
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 36 0.039
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479... 34 0.12
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 33 0.21
04_04_1612 + 34773218-34773414,34773655-34773738,34773871-347739... 30 2.6
09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629 29 5.9
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 28 7.8
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 109 bits (263), Expect = 2e-24
Identities = 68/219 (31%), Positives = 101/219 (46%)
Frame = -3
Query: 778 DENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQL 599
D + R DGR ++ R F +T + A GSAY E KTKV+ SVF PRE +
Sbjct: 36 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 95
Query: 598 GQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILE 419
G+L C V + F+ P + + ++ K S L +ALE AV H FP +DV +LE
Sbjct: 96 GRLNCNVSYTTFATPIRGQ----GMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLE 151
Query: 418 HDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEEHIAKNSTEVNH 239
GS + ++D++TS SV+ G + IDPT EE
Sbjct: 152 SGGSDLPIIISCASLALADAGIMIYDLVTSVSVSCFGKNIIIDPTSDEE-------AWQD 204
Query: 238 GIITMSVLSQLKQISDFTQIGSMDVECVTKVMEVLLKEC 122
G I ++ + K+I+ T G +T +E+ + C
Sbjct: 205 GSIMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDAC 243
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 106 bits (254), Expect = 2e-23
Identities = 60/169 (35%), Positives = 82/169 (48%)
Frame = -3
Query: 778 DENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQL 599
D + R DGR ++ R F +T + A GSAY E KTKV+ SVF PRE +
Sbjct: 34 DADWPRADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDT 93
Query: 598 GQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILE 419
G+L C V + F+ P + + + K S L +ALE AV H FP +DV +LE
Sbjct: 94 GRLNCNVSYTTFATPIRGQ----GTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLE 149
Query: 418 HDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEE 272
GS + M+D++TS SV+ G + IDPT EE
Sbjct: 150 SGGSDLPIIISCASLALADAGIMMYDLVTSVSVSCFGKNIIIDPTSDEE 198
>09_02_0074 +
3905810-3905981,3906115-3906175,3906522-3906573,
3906791-3906832,3906910-3906977,3907521-3907599,
3907685-3907721,3908048-3908164,3908247-3908332,
3908552-3908641,3909679-3909779,3909801-3909885
Length = 329
Score = 66.9 bits (156), Expect = 2e-11
Identities = 38/163 (23%), Positives = 73/163 (44%)
Frame = -3
Query: 586 CEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 407
CE + A FS +RR D +S+ +RQ +E ++ H P QID+ + +L+ DG
Sbjct: 112 CEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADGG 171
Query: 406 CXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEEHIAKNSTEVNHGIIT 227
+PM DI+TSCS + + +D IE+ +T
Sbjct: 172 TRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGGPD-------VT 224
Query: 226 MSVLSQLKQISDFTQIGSMDVECVTKVMEVLLKECEIIVPNIQ 98
+ L+++ +++ + ++ VM++ ++ C+ I I+
Sbjct: 225 VGFLTKMDKVTLLQMDAKLPMDTFETVMDLAIEGCKAIANYIR 267
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 35.9 bits (79), Expect = 0.039
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Frame = -3
Query: 775 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTK--VVCSVFD---PREIPHQNE 611
E GKR DGR E R + ++ ++ +A GSA +T+ V ++ D + I + +
Sbjct: 407 EGGKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVD 466
Query: 610 FRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAV-CRHFFPNYQIDVL 434
+ Y + F P S R P+ E + +ALEP + FP Y I V
Sbjct: 467 TEESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFP-YTIRVE 525
Query: 433 IYILEHDGS 407
I E +GS
Sbjct: 526 STITESNGS 534
>02_04_0625 -
24547435-24547569,24547674-24547742,24547871-24547997,
24548086-24548209,24548714-24548832,24548953-24549044,
24549124-24549329,24549429-24549534,24549636-24549740,
24549836-24549942,24550030-24550253,24550341-24550468,
24550945-24551022,24551338-24552012,24552655-24552798,
24552985-24553064,24553958-24554029,24554124-24554343,
24554460-24554590,24555118-24555243,24555567-24555695,
24556156-24556318,24556408-24556545,24557198-24557317,
24557521-24557682,24557751-24557876,24558172-24558342,
24558435-24558590,24559061-24559408
Length = 1526
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 775 ENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 644
E G R DGR+L+E R ++ + GSA T+V+C+V
Sbjct: 369 EKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTV 412
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 33.5 bits (73), Expect = 0.21
Identities = 28/119 (23%), Positives = 52/119 (43%)
Frame = -3
Query: 763 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 584
R DGR N+ R + + +A GSA T V+ +V+ P+ + E + +
Sbjct: 5 RADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASI-- 62
Query: 583 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGS 407
EV + P + + +EK + L++ L+ PN V++ ++ +DGS
Sbjct: 63 EVVWKPMTGQIGK-------QEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGS 114
>04_04_1612 +
34773218-34773414,34773655-34773738,34773871-34773944,
34774312-34774388,34774491-34774527,34774691-34774776,
34775048-34775107,34775216-34775361,34775780-34775906,
34776164-34776319,34776409-34776519,34776725-34776835,
34777040-34777138,34777316-34777444
Length = 497
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -3
Query: 325 SVAVIGNKMFIDPTEIEEHIAKNSTEVNHGIITMS-----VLSQLKQISDFTQIGSMDVE 161
+ V+G K F+ P+ I + NST + G++T++ +L ++I D +D E
Sbjct: 178 NAGVLGLKSFMCPSGINDFPMTNSTHIEEGLVTLAKYKRPLLIHAERIPDVQNEDGIDGE 237
Query: 160 CVTKVMEVLLK 128
K LK
Sbjct: 238 LDPKAYTTYLK 248
>09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629
Length = 134
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 175 SMDVECVTKVMEVLLKECEIIVPNIQRVLVVDVVKNFELKKHLEAETKKREEILKK 8
+MDV C+T + ++ I++ + V + E K+ E E K++EE KK
Sbjct: 48 NMDVTCLTMELRKQMRRTHIVIDTVTPVDEKKEKEEKEKKEKEEKEKKEKEEKEKK 103
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 28.3 bits (60), Expect = 7.8
Identities = 18/89 (20%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = -3
Query: 310 GNKMFIDP-TEIEEHIAKNSTEVNHGIITMSVLSQLKQISDFTQIGSMDVECVTKVMEVL 134
G ++DP T + H+ S + G++ + ++++ K + + T G+ + + +M
Sbjct: 623 GTLGYLDPETFVSHHLTDKSDTYSFGVVLLEIMTRKKALYNDTLNGNEALSHIFPLMFHQ 682
Query: 133 LKECEII-VPNIQRVLVVDVVKNFELKKH 50
+ C+++ I ++V + K EL H
Sbjct: 683 KRHCDMLDFDMIDEKVMVVLQKLAELAMH 711
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,460,120
Number of Sequences: 37544
Number of extensions: 324441
Number of successful extensions: 893
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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