Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_K04
(822 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6 pro... 96 1e-19
BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4 pro... 91 6e-18
AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens ... 91 6e-18
AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41... 91 6e-18
BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide nucl... 40 0.011
AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease p... 40 0.011
AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide phosphor... 40 0.011
AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein. 40 0.011
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 40 0.014
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 40 0.014
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 40 0.014
AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens ... 36 0.13
D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein. 31 3.8
BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7 pro... 31 3.8
AL138751-4|CAH72768.1| 179|Homo sapiens chromosome 9 open readi... 31 5.0
AK057071-1|BAB71360.1| 179|Homo sapiens protein ( Homo sapiens ... 31 5.0
X54363-1|CAA38246.1| 405|Homo sapiens B cell antigen CD75 protein. 30 8.8
>BC052252-1|AAH52252.1| 272|Homo sapiens exosome component 6
protein.
Length = 272
Score = 96.3 bits (229), Expect = 1e-19
Identities = 72/256 (28%), Positives = 123/256 (48%), Gaps = 17/256 (6%)
Frame = -3
Query: 802 DEQLKDLYDENGKRKDG-RELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI 626
+ Q LY + + G R+ R ++AR ++SQAKGSAY+E TKV+C+V PR+
Sbjct: 13 ESQPPQLYAADEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQA 72
Query: 625 PH------------QNEFRQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 482
+ G+L C+ + APF+ R+R P EE+ L++AL++ALE
Sbjct: 73 EGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAP-PGGCEERELALALQEALE 131
Query: 481 PAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVI--- 311
PAV +P Q++V +LE GS V M+D++ C +++
Sbjct: 132 PAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPGP 191
Query: 310 GNKMFIDPTEIEEHIAKNSTEVNHGIITMSVLSQLKQISDFTQIGSMDV-ECVTKVMEVL 134
+DPT +EE A +T++++ L Q++ G + E + + +
Sbjct: 192 APTWLLDPTRLEEERAAAG-------LTVALMPVLNQVAGLLGSGEGGLTESWAEAVRLG 244
Query: 133 LKECEIIVPNIQRVLV 86
L+ C+ + P +Q+ LV
Sbjct: 245 LEGCQRLYPVLQQSLV 260
>BC002777-1|AAH02777.1| 245|Homo sapiens exosome component 4
protein.
Length = 245
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -3
Query: 787 DLYDENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--PHQN 614
+L + G R DGR E R + AR + +QA GSAY+E TK + V+ P EI
Sbjct: 5 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRAR 64
Query: 613 EFRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDV 437
+ C+ A FS RKRRP+ D + + + LRQ E A+ P QID+
Sbjct: 65 ALPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 436 LIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEE 272
+ +L+ DG +PM D + +CS + D + +EE
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
>AK000598-1|BAA91279.1| 245|Homo sapiens protein ( Homo sapiens
cDNA FLJ20591 fis, clone KAT09018. ).
Length = 245
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -3
Query: 787 DLYDENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--PHQN 614
+L + G R DGR E R + AR + +QA GSAY+E TK + V+ P EI
Sbjct: 5 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRAR 64
Query: 613 EFRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDV 437
+ C+ A FS RKRRP+ D + + + LRQ E A+ P QID+
Sbjct: 65 ALPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 436 LIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEE 272
+ +L+ DG +PM D + +CS + D + +EE
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
>AF281133-1|AAF82134.1| 245|Homo sapiens exosome component Rrp41
protein.
Length = 245
Score = 90.6 bits (215), Expect = 6e-18
Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 3/175 (1%)
Frame = -3
Query: 787 DLYDENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREI--PHQN 614
+L + G R DGR E R + AR + +QA GSAY+E TK + V+ P EI
Sbjct: 5 ELLSDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRAR 64
Query: 613 EFRQLGQLYCEVKFAPFSC-PRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDV 437
+ C+ A FS RKRRP+ D + + + LRQ E A+ P QID+
Sbjct: 65 ALPDRALVNCQYSSATFSTGERKRRPH-GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDI 123
Query: 436 LIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEE 272
+ +L+ DG +PM D + +CS + D + +EE
Sbjct: 124 YVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFVDGTALADLSHVEE 178
>BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide
nucleotidyltransferase 1 protein.
Length = 783
Score = 39.9 bits (89), Expect = 0.011
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 10/176 (5%)
Frame = -3
Query: 766 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 590
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 589 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 437
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 436 LIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEEH 269
+LE +GS VP+ + ++ ++ K + EIE++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV-TKTDPEKGEIEDY 527
>AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease
protein.
Length = 783
Score = 39.9 bits (89), Expect = 0.011
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 10/176 (5%)
Frame = -3
Query: 766 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 590
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 589 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 437
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 436 LIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEEH 269
+LE +GS VP+ + ++ ++ K + EIE++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV-TKTDPEKGEIEDY 527
>AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide
phosphorylase-like protein protein.
Length = 783
Score = 39.9 bits (89), Expect = 0.011
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 10/176 (5%)
Frame = -3
Query: 766 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 590
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 589 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 437
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 436 LIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEEH 269
+LE +GS VP+ + ++ ++ K + EIE++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV-TKTDPEKGEIEDY 527
>AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein.
Length = 783
Score = 39.9 bits (89), Expect = 0.011
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 10/176 (5%)
Frame = -3
Query: 766 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPREIPHQNEFRQLGQL 590
KR DGR+L R++ DM GSA + +T+V+C+V FD E +++ Q+
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSD--QVITA 414
Query: 589 YCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQ---------ALEPAVCRHFFPNYQIDV 437
+K F + PY + K + R+ AL P + R F + I V
Sbjct: 415 INGIKDKNFMLHYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDF--PFTIRV 472
Query: 436 LIYILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEEH 269
+LE +GS VP+ + ++ ++ K + EIE++
Sbjct: 473 TSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIGLV-TKTDPEKGEIEDY 527
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 39.5 bits (88), Expect = 0.014
Identities = 29/94 (30%), Positives = 39/94 (41%)
Frame = -3
Query: 763 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 584
R DGREL E R+ +S A GSA V+L T V+C V P + G +
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 81
Query: 583 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 482
V P C + R P E + S + +E
Sbjct: 82 NVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 114
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 39.5 bits (88), Expect = 0.014
Identities = 29/94 (30%), Positives = 39/94 (41%)
Frame = -3
Query: 763 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 584
R DGREL E R+ +S A GSA V+L T V+C V P + G +
Sbjct: 23 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 81
Query: 583 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 482
V P C + R P E + S + +E
Sbjct: 82 NVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 114
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 39.5 bits (88), Expect = 0.014
Identities = 29/94 (30%), Positives = 39/94 (41%)
Frame = -3
Query: 763 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEFRQLGQLYC 584
R DGREL E R+ +S A GSA V+L T V+C V P + G +
Sbjct: 21 RPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAP-STDAPDKGYVVP 79
Query: 583 EVKFAPFSCPRKRRPYVPDVEEKALSVALRQALE 482
V P C + R P E + S + +E
Sbjct: 80 NVDLPPL-CSSRFRSGPPGEEAQVASQFIADVIE 112
>AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens
cDNA FLJ14531 fis, clone NT2RM2000371, weakly similar to
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (EC 2.7.7.8).
).
Length = 504
Score = 36.3 bits (80), Expect = 0.13
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -3
Query: 766 KRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FDPRE 629
KR DGR+L R++ DM GSA + +T+V+C+V FD E
Sbjct: 357 KRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLE 403
>D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein.
Length = 290
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 763 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 644
R DGR + R + TD+VS GSA V+L T ++ V
Sbjct: 22 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGV 61
>BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7
protein.
Length = 291
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 763 RKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV 644
R DGR + R + TD+VS GSA V+L T ++ V
Sbjct: 23 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGV 62
>AL138751-4|CAH72768.1| 179|Homo sapiens chromosome 9 open reading
frame 85 protein.
Length = 179
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 177 PICVKSEICFNCDNTDIVIIPWFTSVLFFAICSSISVGSMNILLPMTA 320
P + E+C C + ++IPW +L CS + N+ LP ++
Sbjct: 88 PCACELEVCAKCGKKEDIVIPWSLPLLPRLECSGRILAHHNLRLPCSS 135
>AK057071-1|BAB71360.1| 179|Homo sapiens protein ( Homo sapiens
cDNA FLJ32509 fis, clone SMINT1000054. ).
Length = 179
Score = 31.1 bits (67), Expect = 5.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 177 PICVKSEICFNCDNTDIVIIPWFTSVLFFAICSSISVGSMNILLPMTA 320
P + E+C C + ++IPW +L CS + N+ LP ++
Sbjct: 88 PCACELEVCAKCGKKEDIVIPWSLPLLPRLECSGRILAHHNLRLPCSS 135
>X54363-1|CAA38246.1| 405|Homo sapiens B cell antigen CD75 protein.
Length = 405
Score = 30.3 bits (65), Expect = 8.8
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 269 YSKEQHRSKPRNYNNVSVITVKTDFRFHTNRFYG 168
+S E R PR++ NVS++ V TDF F+T+ + G
Sbjct: 134 FSAEALRCHPRDHVNVSMVEV-TDFPFNTSEWEG 166
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,239,420
Number of Sequences: 237096
Number of extensions: 1832289
Number of successful extensions: 4068
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4062
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10259383312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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