Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_K04
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical pr... 75 8e-14
Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z50109-1|CAA90433.3| 142|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z70686-3|CAA94611.1| 364|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell death-re... 29 4.0
AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical ... 29 4.0
AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical... 28 9.3
>Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical
protein B0564.1a protein.
Length = 240
Score = 74.5 bits (175), Expect = 8e-14
Identities = 44/172 (25%), Positives = 75/172 (43%)
Frame = -3
Query: 787 DLYDENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSVFDPREIPHQNEF 608
++ E+G R DGR + R++ R + A+GS Y+E TKV+C+V+ P E
Sbjct: 2 NIISEHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRI 61
Query: 607 RQLGQLYCEVKFAPFSCPRKRRPYVPDVEEKALSVALRQALEPAVCRHFFPNYQIDVLIY 428
+ C+ FS ++ D + +S L +A E + FP Q+D+
Sbjct: 62 EDKCAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCE 121
Query: 427 ILEHDGSCXXXXXXXXXXXXXXXAVPMFDIITSCSVAVIGNKMFIDPTEIEE 272
+++ DGS +PM I ++ + V+ K +D T EE
Sbjct: 122 VIQGDGSNLAACVNATSLALADAGIPMKGIASAATCGVVDGKPIVDLTSREE 173
>Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical
protein R09E10.6 protein.
Length = 299
Score = 34.3 bits (75), Expect = 0.11
Identities = 21/111 (18%), Positives = 53/111 (47%)
Frame = -3
Query: 343 DIITSCSVAVIGNKMFIDPTEIEEHIAKNSTEVNHGIITMSVLSQLKQISDFTQIGSMDV 164
D I+ + A++ + PT +AK + + + TM+ + ++ + T +
Sbjct: 128 DDISKWTAALLEAHVSFRPTAAARVVAKPRQQPSKNVETMTAIEPVEVMDSPTSPVTSSN 187
Query: 163 ECVTKVMEVLLKECEIIVPNIQRVLVVDVVKNFELKKHLEAETKKREEILK 11
+ V+E + + ++P+++R ++ ++++KHLE T E++ K
Sbjct: 188 SGLITVLERGVSSEDTLIPSVRRGVIPVNTLRYQIEKHLEMCTPASEQLSK 238
>Z50109-1|CAA90433.3| 142|Caenorhabditis elegans Hypothetical
protein C09H10.1 protein.
Length = 142
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 106 NIQRVLVVDVVKNFELKKHLEAETKKRE 23
NIQ + ++ K LKK LE E KKRE
Sbjct: 100 NIQMEMEIEKFKKENLKKQLEVEKKKRE 127
>Z70686-3|CAA94611.1| 364|Caenorhabditis elegans Hypothetical
protein R10H10.3 protein.
Length = 364
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -3
Query: 286 TEIEEHIAKNSTEV-NHGIITMSVLSQLKQISDFTQIGSMDVECV 155
T+I+ I ++ +V ++ +T VL+ L+ + D T +MD+EC+
Sbjct: 210 TDIDYAIVWSADDVPSNANVTQEVLNMLEYVPDVTTDNNMDLECL 254
>Z49909-6|CAA90109.1| 214|Caenorhabditis elegans Hypothetical
protein C14A4.5 protein.
Length = 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/86 (19%), Positives = 34/86 (39%)
Frame = -3
Query: 529 DVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXAVP 350
D + L+ + L A+ FP+ I V ++ ++ DGS +P
Sbjct: 63 DNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP 122
Query: 349 MFDIITSCSVAVIGNKMFIDPTEIEE 272
+ + + +++ IDPT +E
Sbjct: 123 FETVFCGVLIVRVKDELIIDPTAKQE 148
>AY303579-1|AAP57301.1| 214|Caenorhabditis elegans cell
death-related nuclease 5 protein.
Length = 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/86 (19%), Positives = 34/86 (39%)
Frame = -3
Query: 529 DVEEKALSVALRQALEPAVCRHFFPNYQIDVLIYILEHDGSCXXXXXXXXXXXXXXXAVP 350
D + L+ + L A+ FP+ I V ++ ++ DGS +P
Sbjct: 63 DNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMP 122
Query: 349 MFDIITSCSVAVIGNKMFIDPTEIEE 272
+ + + +++ IDPT +E
Sbjct: 123 FETVFCGVLIVRVKDELIIDPTAKQE 148
>AC092690-2|AAK73855.2| 745|Caenorhabditis elegans Hypothetical
protein BE0003N10.1 protein.
Length = 745
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 793 LKDLYDENGKRKDGRELNEARSMFARTDMVSQAKGSAYVELRKTKVVCSV-FD-PREIPH 620
L+D G R DGR +E R + DM + G + + +T+V+ +V FD P H
Sbjct: 324 LRDTTLRTGIRCDGRRPDEFRPITIHVDMYKKLHGCSIFQRGQTQVMSTVTFDSPAAAFH 383
Query: 619 QNEFRQL 599
+ QL
Sbjct: 384 PDSVAQL 390
>AF078157-12|AAG24073.1| 338|Caenorhabditis elegans Hypothetical
protein F25E5.2 protein.
Length = 338
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 162 STSIEPICVKSEICFNC-DNTD 224
S S IC+K + C+NC DN D
Sbjct: 189 SRSFVEICIKQKACYNCQDNVD 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,739
Number of Sequences: 27780
Number of extensions: 318376
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -