Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J22
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    26   4.4  
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   5.8  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   5.8  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   7.7  

>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 329 YDDERVGAWLIDFAKTRKIPTGSQVNHRAPWQQGNHEEGFLFGLDRLIQTIETAK---LS 159
           Y+D+ V    +  + T  +P+G QV+ +      NH EG    +D+ +Q  +  K   +S
Sbjct: 40  YNDKAVEEDTLKKSSTGSLPSGQQVHCQYVLDDPNHVEG--ISVDQSLQVPKFEKNWLIS 97

Query: 158 PQGDEVV 138
           P G   V
Sbjct: 98  PPGSPPV 104


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 203 GLDRLIQTIETAKLSPQGDEVVEEPDVSR*TIKAR 99
           GL+ L  T  T K  P+ ++V+  P  +R T+K R
Sbjct: 297 GLEDLCLTFHTDKDHPEANQVLYTPIYARSTLKRR 331


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = -3

Query: 332  IYDDERVGAWLIDFAKTRKIP---TGSQVNHRAPWQQGNHEEGFLFGLDRLIQTIETAKL 162
            +Y  + +G  L D  K  ++      S+ N    WQQG       FG       ++T  L
Sbjct: 1086 LYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDTGDL 1145

Query: 161  SPQGDEVVEEPDVSR*TIK 105
                +  + +P +SR  IK
Sbjct: 1146 MAVKEVALHKPRISRPMIK 1164


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 536 LLQYENLARQKMNVVHETAYS 598
           L +Y NL R  M V+H+  YS
Sbjct: 119 LTKYHNLVRSCMQVLHQVQYS 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,628
Number of Sequences: 5004
Number of extensions: 56636
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)