Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_J20
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0132 + 17024727-17025265,17025424-17025510,17025617-170256... 28 3.1
06_03_0126 + 16978566-16979104,16979279-16979365,16979481-169795... 28 3.1
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766... 27 5.4
04_02_0008 + 8473198-8475523,8475618-8475967 27 5.4
04_02_0006 + 8455219-8457469,8457560-8457924 27 5.4
04_01_0619 - 8125611-8127967,8128449-8130123 27 5.4
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674... 27 7.1
02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492 27 7.1
11_06_0471 + 23982629-23982875,23982965-23983123,23983199-239833... 26 9.4
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 26 9.4
06_01_0465 - 3304417-3306834 26 9.4
02_05_1008 - 33461225-33462334 26 9.4
01_01_0824 + 6411899-6411931,6412001-6412210,6412302-6412451,641... 26 9.4
>06_03_0132 +
17024727-17025265,17025424-17025510,17025617-17025673,
17028754-17028992,17029161-17029279,17029395-17029481,
17029570-17029629
Length = 395
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = -3
Query: 347 LIVSINVYNYVIWLIPLAMGNAVSRLVTLEM 255
L +S+N + ++W+IP +G+A+S V+ E+
Sbjct: 206 LSISLNTAS-LVWMIPFGLGSAISTRVSNEL 235
>06_03_0126 +
16978566-16979104,16979279-16979365,16979481-16979537,
16979648-16979886,16981776-16981894,16982010-16982096,
16983898-16983971,16984483-16984547,16984581-16984961,
16985136-16985401
Length = 637
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 347 LIVSINVYNYVIWLIPLAMGNAVSRLVTLEM 255
L +S+N +V W+IP +G+A+S V+ E+
Sbjct: 206 LSISLNTAAFV-WMIPFGLGSAISTRVSNEL 235
>05_03_0041 -
7662094-7662138,7662269-7662340,7663144-7663179,
7663356-7663449,7663533-7663681,7664525-7664864,
7666417-7666748,7667348-7667821
Length = 513
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 43 ISQLSF*FYNGNSSQDPVLWVPMKHISHM 129
IS F FY Q P++W P + I H+
Sbjct: 452 ISSADFDFYIDECMQQPLVWFPAEDIIHV 480
>04_02_0008 + 8473198-8475523,8475618-8475967
Length = 891
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 323 NYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTLIGASN 201
N +I IP +G+ + L +L M L R DG +L ASN
Sbjct: 169 NSLIGKIPPDIGHTLPNLKSLVMSLNRFDGSIPTSLANASN 209
>04_02_0006 + 8455219-8457469,8457560-8457924
Length = 871
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 323 NYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTLIGASN 201
N +I IP +G+ + L +L M L R DG +L ASN
Sbjct: 84 NSLIGKIPPDIGHTLPNLKSLVMSLNRFDGSIPTSLANASN 124
>04_01_0619 - 8125611-8127967,8128449-8130123
Length = 1343
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 323 NYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTLIGASNSV 195
NY +P +GN S L+ V R GD TL+ SN V
Sbjct: 912 NYFTGELPNYVGNFSSTLINFFAVGNRLSGDLPSTLLNLSNLV 954
>11_06_0618 +
25565780-25566064,25566855-25567046,25567144-25567416,
25567636-25567738,25568273-25568391,25568615-25568782,
25568908-25569386,25569742-25569850,25569905-25570070,
25571405-25571433
Length = 640
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 76 NSSQDPVLWVPMKHISHMKLLKIALXNPATIGATTPDKDLTLLEAP 213
++SQ+P+ + P I HM +L + P++I + D+ + L E P
Sbjct: 475 SASQEPLQFYPPGRIMHMVVLP-SPKEPSSIDQCSQDECVALYETP 519
>02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492
Length = 534
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 103 VPMKHISHMKLLKIALXNPATIGATT-PDKDLTLLEAPI 216
V + I H + AL NPAT+ +++ PD+ L L P+
Sbjct: 448 VEARRIVHKLIALCALANPATVWSSSFPDRSLILSGIPM 486
>11_06_0471 +
23982629-23982875,23982965-23983123,23983199-23983357,
23983433-23983496,23983813-23983900,23985497-23985517,
23985950-23986020,23986299-23986502,23986680-23986686
Length = 339
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 205 EAPINVPL*SPSLLFSTISNVTNL 276
E P NV + S +++ T++NVTNL
Sbjct: 68 ETPSNVSIPSSTIVTGTLANVTNL 91
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 347 LIVSINVYNYVIWLIPLAMGNAVSRLVTLEMVLKRSDGDHRGTLIGASNSVRSLSG 180
L V+ ++ + +P A+G R E++L+ G ++IG VR LSG
Sbjct: 226 LTVAETLWYTALLRLPRALGAGEKRAQAEEVMLELGLGKVAHSMIGGVRGVRGLSG 281
>06_01_0465 - 3304417-3306834
Length = 805
Score = 26.2 bits (55), Expect = 9.4
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = -3
Query: 332 NVYNYVIWLIPLAMGNAVSRLVT-----LEMVLKRS 240
+VY+Y + L+ L GN VSR V +EM +KR+
Sbjct: 704 DVYSYGVVLLELVKGNRVSRWVVDGEEEVEMAVKRT 739
>02_05_1008 - 33461225-33462334
Length = 369
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 181 PDKDLTLLEAPINVPL*SPSLLFSTISNVTNLLTALP 291
P +DLT L P+ +PL S ST S+ ++ L +P
Sbjct: 38 PQRDLTSLAVPLPLPLPPSSAPSSTSSSGSSSLGGVP 74
>01_01_0824 +
6411899-6411931,6412001-6412210,6412302-6412451,
6413787-6413969,6417705-6417779,6417959-6418102,
6418233-6418418,6418515-6418694
Length = 386
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 308 LIPLAMGNAVSRLVTLEMVLKRSDGD 231
L+P+A G L+T+ VL+R+D D
Sbjct: 219 LVPVANGTEEMELITIIDVLRRADAD 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,910,623
Number of Sequences: 37544
Number of extensions: 158451
Number of successful extensions: 378
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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