Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J20
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical ...    29   1.2  
AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine re...    28   2.7  
Z81546-5|CAB04454.2|  212|Caenorhabditis elegans Hypothetical pr...    26   8.4  
Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical pr...    26   8.4  
U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine rece...    26   8.4  
AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation fa...    26   8.4  
AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation fa...    26   8.4  
AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation fa...    26   8.4  

>Z19153-2|CAA79549.1|  493|Caenorhabditis elegans Hypothetical
           protein C38C10.2 protein.
          Length = 493

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 317 VIWLIPLAMGNAVSRLVTLEMVLKRSD--GDHRGTLIGASNSVRSLSGVVAPMVAGF 153
           V+ +I +  G A+S L     V+   +      GT++G  N++ +L+G+++P V+ +
Sbjct: 373 VLVIIFITCGMAISGLQYAGFVVNYLEIAPPFSGTVMGTGNTISALAGIISPAVSSY 429


>AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical
           protein ZC328.3a protein.
          Length = 616

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +1

Query: 43  ISQLSF*FYNGNSSQDPVLWVPMKHISHMKLLKIALXNPATIGATTPDKDLTLLEAPIN 219
           ISQ +  FY      +  L +PMK IS +K +K A   P +I      K+     + IN
Sbjct: 112 ISQFNVCFYANIIGWETTLVIPMKEISLVKKMKAAFIFPNSIQIERDTKEKYFFASFIN 170


>AF067950-6|AAG24156.2|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein122 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 314 LHNCTHLLILLTLSMKYLITKTHV 385
           L+ CTHL + L +S +Y  T  HV
Sbjct: 320 LNTCTHLFVCLFMSSQYRSTTIHV 343


>Z81546-5|CAB04454.2|  212|Caenorhabditis elegans Hypothetical
           protein F53A2.6 protein.
          Length = 212

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 247 FSTISNVTNLLTALPIAKGINHIT*LYTFIDTINPVNEILNNKN 378
           F+T+S    L  A+    G+N +     F D I P+ E+  N N
Sbjct: 41  FNTVSEFWALYDAIRPPSGLNALCDYNVFRDDIQPMWEVPENSN 84


>Z66520-1|CAA91388.1|  655|Caenorhabditis elegans Hypothetical
           protein F49E12.1 protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 325 YTFIDTINPVNEILNN 372
           Y FID +N +N +LNN
Sbjct: 448 YRFIDGVNNINHVLNN 463


>U80030-2|AAG24161.2|  362|Caenorhabditis elegans Serpentine
           receptor, class w protein121 protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 314 LHNCTHLLILLTLSMKYLITKTHV 385
           L++CTHL+I L +S +Y  T   +
Sbjct: 320 LNSCTHLIICLIMSSQYRSTTIQI 343


>AF068714-4|AAK68676.1|  251|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform b protein.
          Length = 251

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 244 LFSTISNVTNLLTALPIAKGINHIT*LYTFIDTINPVNEILNN 372
           LF T+ +  +L   +  A G+N  +  Y F + I P+ E +NN
Sbjct: 60  LFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNN 102


>AF068714-3|AAM22022.1|  250|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform c protein.
          Length = 250

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 244 LFSTISNVTNLLTALPIAKGINHIT*LYTFIDTINPVNEILNN 372
           LF T+ +  +L   +  A G+N  +  Y F + I P+ E +NN
Sbjct: 60  LFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNN 102


>AF068714-2|AAC17807.1|  248|Caenorhabditis elegans Initiation
           factor 4e (eif4e) familyprotein 3, isoform a protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 244 LFSTISNVTNLLTALPIAKGINHIT*LYTFIDTINPVNEILNN 372
           LF T+ +  +L   +  A G+N  +  Y F + I P+ E +NN
Sbjct: 60  LFDTVEDFWSLYNHIQSAGGLNWGSDYYLFKEGIKPMWEDVNN 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,182,968
Number of Sequences: 27780
Number of extensions: 151351
Number of successful extensions: 329
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)