Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J19
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical pr...   101   5e-22
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    32   0.44 
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    32   0.44 
AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related ...    31   1.3  
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    28   9.4  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    28   9.4  

>Z75546-2|CAA99890.1|  133|Caenorhabditis elegans Hypothetical
           protein R05D11.3 protein.
          Length = 133

 Score =  101 bits (243), Expect = 5e-22
 Identities = 50/114 (43%), Positives = 77/114 (67%), Gaps = 4/114 (3%)
 Frame = -1

Query: 826 YTLFD--DPAXRAN-LVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVD 656
           Y+ FD  D   RA  L ++Y+ E S+MTFEG Q +G   I++K  +L F KI R +T +D
Sbjct: 19  YSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQKFTTLGFTKIQRAITVID 78

Query: 655 SQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD-SFYVQHDIFRLGIHD 497
           SQP++DG + + VLG+LK DEDP + + Q F+L+P    S+++ ++IFRL +H+
Sbjct: 79  SQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIGNEIFRLDLHN 132


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 28/106 (26%), Positives = 43/106 (40%)
 Frame = -1

Query: 829 IYTLFDDPAXRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQ 650
           +YT   +     N +N Y+    FM       +        + SL  Q++   VT   S 
Sbjct: 41  LYTQVSNAVWNGNPINGYDSICEFM-------KALPSTQHDIQSLDAQRLPEGVTGDMS- 92

Query: 649 PMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 512
               GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  ----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 28/106 (26%), Positives = 43/106 (40%)
 Frame = -1

Query: 829 IYTLFDDPAXRANLVNMYNVETSFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQ 650
           +YT   +     N +N Y+    FM       +        + SL  Q++   VT   S 
Sbjct: 41  LYTQVSNAVWNGNPINGYDSICEFM-------KALPSTQHDIQSLDAQRLPEGVTGDMS- 92

Query: 649 PMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 512
               GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 93  ----GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 134


>AC024852-3|ABQ13048.1|  131|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform b protein.
          Length = 131

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 637 GGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 512
           GG+L+NV G +  D D    + QT +L      + V+ D FR
Sbjct: 87  GGMLLNVAGAVTVDGDSKRAFTQTLLLGVEDGKYKVKSDRFR 128


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 197 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKXV 75
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 197 FIIVTLGDNAILGYAILRVV--NYTFKYQ*HTNTSFIMLLKXV 75
           F I+  G +  L + IL ++   Y FK   H N  F+M+L  V
Sbjct: 18  FAIIFQGTSGYLTFPILFIILKKYAFKVYYHPNLVFLMMLNVV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,017,340
Number of Sequences: 27780
Number of extensions: 405083
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)