Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J18
         (819 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    31   0.26 
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    27   3.2  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   7.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   9.8  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   9.8  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 645 LQMITGRLLTLNLNVRGIFRGDVNIF 568
           L  I G++L  N N+RGIF G V++F
Sbjct: 275 LTSIIGQILNRNANIRGIFVGSVSMF 300


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 488 LSIVQASTEKSLRNKLSIDIFNIFFFS-KIFTSPR-KIPLTFRFKVNNRPV 634
           +++++  +   L+N +S  +FN+F FS  +F   +  IPL  R KV    V
Sbjct: 283 INLIRERSFNLLKNFVSASLFNVFLFSGTVFMRVKVGIPLFERLKVGTNKV 333


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 343 PVSNYTLTILLCYCCNV 293
           P+SN TL + L  CCN+
Sbjct: 112 PISNTTLVLFLTECCNI 128


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 539 SKVCFLMTFQCLLALSIK-YALEYI 468
           SK+C L TFQ LL   +  YA+ ++
Sbjct: 12  SKICLLRTFQSLLPFVVPLYAMRFV 36


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 527 FLMTFQCLLALSIKYALEYIFFILTIN*NFCLETL 423
           FL T+  L+ LS+ Y L+    +L ++ N C+ET+
Sbjct: 242 FLSTYNVLVMLSLDYKLK----VLDLSTNQCVETI 272


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 74  GTYCNTTN---STAF*LSSKIDFFSLSAI-SPFDIYCACSSVSLNTTTACVINSV 226
           G Y NTT      A  LS     +++S   +PF +   CS+ S+N   A V+ +V
Sbjct: 254 GDYINTTQWPTGFAILLSFNSPIWTMSGYDAPFHLSEECSNASVNAPKAIVMTAV 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,697
Number of Sequences: 5004
Number of extensions: 54325
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)