Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J16
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    32   0.18 
Z30423-13|CAE52904.1|   89|Caenorhabditis elegans Hypothetical p...    27   3.8  
AL032660-4|CAE52908.1|   89|Caenorhabditis elegans Hypothetical ...    27   3.8  
U40935-3|AAA81689.1|  334|Caenorhabditis elegans Rfc (dna replic...    27   5.0  
U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm recep...    26   8.8  

>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -2

Query: 321  FILFSTMKKY-GSRNALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKA 145
            F+ FSTM+   G+R  L  +L +   L+ I        +LTDH +  F    P IQA  A
Sbjct: 970  FLNFSTMRMVQGTRRQLLRELVRAK-LINISPNRDVLTVLTDHHFNQFSQCWPMIQAVIA 1028

Query: 144  AAEQELLSEGASE 106
            A     +   ASE
Sbjct: 1029 AGCYPFIGVSASE 1041


>Z30423-13|CAE52904.1|   89|Caenorhabditis elegans Hypothetical
           protein T20G5.14 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 282 NALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELL 124
           N   D  HK  V   +G  ++ T     +   Y+K+VRP  Q  +   E+EL+
Sbjct: 26  NRRLDIAHKVIVRSILGFLVFSTSYCIINAGIYYKFVRPIRQEERELLERELI 78


>AL032660-4|CAE52908.1|   89|Caenorhabditis elegans Hypothetical
           protein T20G5.14 protein.
          Length = 89

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 282 NALYDKLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELL 124
           N   D  HK  V   +G  ++ T     +   Y+K+VRP  Q  +   E+EL+
Sbjct: 26  NRRLDIAHKVIVRSILGFLVFSTSYCIINAGIYYKFVRPIRQEERELLERELI 78


>U40935-3|AAA81689.1|  334|Caenorhabditis elegans Rfc (dna
           replication factor) familyprotein 4 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 187 VLQVCAATDTSIQSSC*TRAFVRRCFRENYVKEDLCN 77
           V Q+ A T   I  SC   AF+RRCF++  + ED+ N
Sbjct: 260 VPQIIALTK-DITKSCTGVAFIRRCFQQ-LMDEDVIN 294


>U53155-10|AAC48271.1|  346|Caenorhabditis elegans Seven tm receptor
           protein 139 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 246 LVCIGLTLYGTVLLTDHFYKYFKYVRPQ 163
           L C   +L   +L T  FY+Y    RPQ
Sbjct: 92  LFCAAYSLMTALLATQFFYRYIVVCRPQ 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,599,375
Number of Sequences: 27780
Number of extensions: 170517
Number of successful extensions: 351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)