Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J10
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    26   3.1  
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom...    25   7.1  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   9.4  
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.4  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   9.4  

>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 111 AAPSMTSCHLTNLISLNEQFLYINIYNL 194
           A PS +SC+L N  SL+   +Y+NI NL
Sbjct: 169 ATPSSSSCNLVNANSLD---IYLNINNL 193


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 234 LNFMKIVWSRFRDPDYIYLYTRIARLKI*D 145
           LNF K +  +++ P+ +Y Y+  +R+K+ D
Sbjct: 88  LNFSKHLSYKYQSPETVYSYSWYSRMKLDD 117


>SPBC691.05c ||SPBP22H7.01c|membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 27  NHFSTFTRPXKRTVLFXLV-VRRTGRGELAAPSMTSCHLTNLISLNEQFLYINIYNLDLG 203
           +HFST  RP   T +F  V V+     ELA    TS  L   +   +   ++N+ ++   
Sbjct: 47  SHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFLCGAL---DDLNHVNVNSVTDI 103

Query: 204 NGSKRFS*NLV*EDFGGDKSD 266
           + S+R    LV +   G K++
Sbjct: 104 DSSERI--RLVYDKITGSKTE 122


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 213 KRFS*NLV*EDFGGD---KSDLATIYFKKMLFCSCFSIINFIDNQLYDSSRHL 362
           K +  +L+ ++ GG+   +    T Y+    F S   +IN+ DN    SS+++
Sbjct: 234 KEYLLSLIKDNLGGNIGYRKSQDTYYYGSTSFGSAKKVINYFDNYHLLSSKYI 286


>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 231 LV*EDFGGDKSDLATIYFKKMLFCSCFSIINFIDNQLYDSSRHLLANNNT 380
           LV E+   D+S +   Y  K+L  S  S I  +   +++S RH++ +N+T
Sbjct: 2   LVRENNSNDRSIIE--YVIKILLISGISRIIILILAMFESIRHIIFHNDT 49


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 13  ENHTKIISRLSRVRXNXQCCXR 78
           + H+ +I  LSRVR   Q C R
Sbjct: 227 KTHSNLIPNLSRVRSPQQACGR 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,001
Number of Sequences: 5004
Number of extensions: 33387
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)