Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J10
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824...    30   1.3  
07_03_0742 + 21113682-21114567,21115413-21115552,21115637-211158...    29   3.1  
04_03_0811 - 19909128-19912214                                         28   5.4  
12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004     27   7.2  
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536...    27   9.5  

>07_03_0906 +
           22481456-22481802,22482105-22482186,22482299-22482400,
           22483005-22483315,22483948-22484044,22484522-22484696,
           22485074-22485150,22485632-22486027,22486254-22486303,
           22487315-22487382,22488142-22488701
          Length = 754

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 395 KATNCFKDNNIKATSADGVVKPPEANERLV 484
           KATN   + +     A+GV+ PPEAN ++V
Sbjct: 389 KATNLSAEQDQPTKPANGVLPPPEANNKVV 418


>07_03_0742 +
           21113682-21114567,21115413-21115552,21115637-21115847,
           21115947-21116184,21116281-21116431,21116535-21116825
          Length = 638

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 268 RSDLSPPKSSYTKFYENRLEPFPRSRLYIFIYKNCSFKD-IRLVR*QLVIDGAASSPRPV 92
           RS L+    +Y  F+ENR+  F R+    F Y    F D   LVR Q    GA+ +P P 
Sbjct: 218 RSCLAQIIGTYIGFFENRVGGFVRAVWCSFQYSTTPFLDGPMLVRLQ-GTSGASPAPSPA 276

Query: 91  RRTTNXNST 65
                 N T
Sbjct: 277 AVVPAVNQT 285


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 93  TGRGELAAPSMTSCHLTNLISLNEQFLYINIYNLDL 200
           + RG   +P+   CH+ NL+ L+   L INI+  DL
Sbjct: 391 SNRGNTLSPN-DKCHVNNLLYLDLTQLNINIFPCDL 425


>12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004
          Length = 348

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 235 TKFYENRLEPFPRSRLYIFIYKNCSFKDIRLVR 137
           ++F+ +    FP+   YI  +K   FKD++L R
Sbjct: 232 SRFFADMWMLFPKEEEYIEWFKKAGFKDVKLKR 264


>12_02_1033 -
           25552157-25552732,25553050-25553505,25553608-25553659,
           25553758-25553831,25553968-25554017,25554106-25554187,
           25554265-25554314,25554405-25554447,25554544-25554624,
           25554723-25554768,25554860-25554906,25554998-25555063,
           25555334-25555400,25555528-25555613
          Length = 591

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 271 ARSDLSPPKSSYTKFYENRL 212
           AR+ L PPK+SY + Y + L
Sbjct: 382 ARNQLEPPKTSYNRTYRSEL 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,343,179
Number of Sequences: 37544
Number of extensions: 186019
Number of successful extensions: 350
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)