Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J04
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    26   2.2  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   6.6  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -3

Query: 204 FNGISVPFYSFGSDYSLRYYFKNAMYLLFIHTIKH*IGRLICVIDVSTVIYIIQ 43
           F+G  +PF  + +   L     N++   F+HT  +    L     V+T+ YI+Q
Sbjct: 307 FSGGLIPFAGYIATEELWNAAYNSLETAFLHTATYQENTLGLAAGVATIDYIVQ 360


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 116 INNKYIAFLK*YLRE*SDPKL*NGTEIPLK 205
           I  KY+ FL   L+E SD K  + T+ P+K
Sbjct: 142 ILEKYLRFLNPDLQELSDKKAVSSTQKPIK 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,695
Number of Sequences: 5004
Number of extensions: 23077
Number of successful extensions: 41
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)