Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J04
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical pr...    28   2.5  
AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine re...    28   3.3  

>Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical
           protein F09C3.4 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -2

Query: 388 VNLTLITVKCXISXTSNISNMYLL*IXXAFEESYSFYVYFNXDKFYIXIYYVNLSHFILK 209
           +N +   VKC +   +N + +  +    AFE++Y    Y + D+F   I ++  +  I+K
Sbjct: 266 INTSKTLVKCVLRGNANFAGLARV-FDPAFEQAYGNISYVSADEFNCTIRFMPENFCIMK 324


>AF125956-5|AAD14722.2|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein80 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -3

Query: 210 NIFNGISVPFYSFG 169
           +IF GI++PFYSFG
Sbjct: 33  HIFAGIAIPFYSFG 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,691,457
Number of Sequences: 27780
Number of extensions: 122891
Number of successful extensions: 258
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)