Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J03
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...   130   3e-31
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    27   2.6  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   4.6  
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c...    26   6.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   8.1  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    26   8.1  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score =  130 bits (313), Expect = 3e-31
 Identities = 58/116 (50%), Positives = 79/116 (68%)
 Frame = -3

Query: 865 SVQDXSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDP 686
           S +  S+FD Y +E+ +G L WSP H+S  FW +NA RLNE    LL+ L H+++ + D 
Sbjct: 324 SSKHLSTFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNEDN 383

Query: 685 VVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLM 518
             LAVAC+D+G Y+R YP G+ +I + G KQR+M L+SH DP VR+EAL  VQ LM
Sbjct: 384 TSLAVACHDLGAYIRSYPEGRSLIIKYGAKQRIMDLMSHPDPEVRFEALSTVQLLM 439


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
 Frame = +3

Query: 441 APTTVPACLSICSFSSCLPRYSQL*TISFCTASKASYR-TFGSS*LRRYMTRCLPPSCSM 617
           +PT+  + +S  S SS  P  +   TIS  ++S +S+  T  SS +    +    P+ S 
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTSS-TISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS 340

Query: 618 MCLPRG*WRTYSPMS*QATASTTGSRLFSSKCTRVRSSS*PRSFKRAAFSRQNLADLCTG 797
             +      + SP S   +++T+ S+  SS  + V SSS   S    + S  +     + 
Sbjct: 341 STISSS---SSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397

Query: 798 DHS 806
            HS
Sbjct: 398 SHS 400


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = -3

Query: 727 LRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSH 569
           LR  +HLL+ S+  ++   A   +   +   P    + EQ+ G Q++  +  H
Sbjct: 118 LRLFIHLLQPSQPSMLQVAAMKTLVCIMADRPLAIRLFEQINGLQQICVVFKH 170


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -3

Query: 715 VHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVR--YEA 542
           ++L   + D  +L  AC  +  Y    P    ++++ GGK +   LL     N R  +  
Sbjct: 65  IYLSTPAFDKTILTSACITVRSYYPSQPPIVQLLDEKGGKHKYTSLLLQLWKNERSVFNI 124

Query: 541 LLAVQKLMVHNWE 503
              VQ L+  ++E
Sbjct: 125 YRLVQALIKQDFE 137


>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 204

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 789 CTGDHSRRPLFTSVAY*SKELXSCTE 866
           C G    RPL T++ Y SK+   C E
Sbjct: 66  CIGTFRARPLVTNLTYFSKQAAFCDE 91


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 509 VVNHKFLHGEQGFVPYIRIVVTQEVHDTLFTTK-LFDDVFAARIVAHIFSDVIASD 673
           VV   ++H  + F+  I+  +TQ ++  + T+K LF  V  ++I      +++A D
Sbjct: 317 VVKELYVHVSRRFMLRIKAAITQMIYKKVLTSKTLFVAVDGSKINLDYVYNLLAKD 372


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/83 (26%), Positives = 30/83 (36%)
 Frame = -3

Query: 718 LVHLLEKSRDPVVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEAL 539
           LV LL  S    +   A   +G  V        II   G       LLSH   N+R EA 
Sbjct: 295 LVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEAC 353

Query: 538 LAVQKLMVHNWEYLGKQLEKEQI 470
             +  +   N + +   +E   I
Sbjct: 354 WTISNITAGNTQQIQAIIESNLI 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,300
Number of Sequences: 5004
Number of extensions: 68159
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)