Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_J03
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 112 3e-25
05_01_0139 + 929343-930188 32 0.69
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 29 3.7
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26... 29 4.9
11_08_0040 + 27891797-27891823,27891934-27892091,27892169-278924... 29 6.4
11_04_0407 + 17335773-17335777,17335930-17336635,17336844-173375... 29 6.4
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 29 6.4
01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658... 29 6.4
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 112 bits (270), Expect = 3e-25
Identities = 47/117 (40%), Positives = 77/117 (65%)
Frame = -3
Query: 865 SVQDXSSFDQYATEVKSGRLEWSPVHKSAKFWRENAARLNERGQELLRTLVHLLEKSRDP 686
+++ SSF++Y +V G L+WSP+HK FWREN E ++LR L+ +++ S D
Sbjct: 189 NLKKLSSFEKYKQQVLLGHLDWSPMHKDPSFWRENINNFEENDFQILRVLMTIIDTSADT 248
Query: 685 VVLAVACYDIGEYVRHYPRGKHIIEQLGGKQRVMYLLSHDDPNVRYEALLAVQKLMV 515
LAVACYD+ ++++++P G+ ++ L K RVM L++H++ VR ALL VQ+L +
Sbjct: 249 TALAVACYDLSQFLQYHPSGRIVVADLKAKDRVMKLMNHENAEVRKNALLCVQRLFL 305
>05_01_0139 + 929343-930188
Length = 281
Score = 31.9 bits (69), Expect = 0.69
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -3
Query: 682 VLAVACYDIGEYVRHYPRGKHI--IEQLGGKQRVMYLL 575
++ VA Y G+ RH PRGKHI + L G M LL
Sbjct: 95 MVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALL 132
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -3
Query: 850 SSFDQYATEVKSGRLEWSPVHKSAKFWRENAA 755
S+ + Y T +++ R++ +PVH SA ++ EN +
Sbjct: 180 STREYYGTGIRATRIKTAPVHASASWYLENVS 211
>11_01_0036 +
268028-268168,268734-268839,268920-269031,269126-269241,
269321-269399,269476-269614,269689-269747,269924-270218,
270303-270362,270502-270933
Length = 512
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/89 (23%), Positives = 39/89 (43%)
Frame = +2
Query: 584 HDTLFTTKLFDDVFAARIVAHIFSDVIASDGEYDRIAALLEQVHQGAKQFLTTFVQTSRV 763
H T + +FDDV + + + S + DG+ D I +++Q+ KQ + F + +
Sbjct: 261 HTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQL--CGKQLIFKFKLSEQN 318
Query: 764 FAPELGRFVYRRPFQAATLYFSSILIKRA 850
+V +R F + LI +A
Sbjct: 319 LTEGTPNYVVKRTFVPDYMLEKQYLINKA 347
>11_08_0040 +
27891797-27891823,27891934-27892091,27892169-27892463,
27892548-27892607,27892686-27893036
Length = 296
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/100 (22%), Positives = 43/100 (43%)
Frame = +2
Query: 551 PYIRIVVTQEVHDTLFTTKLFDDVFAARIVAHIFSDVIASDGEYDRIAALLEQVHQGAKQ 730
P R+ + H T + +FDDV + + + S + DG+ D I +++Q+ KQ
Sbjct: 61 PRYRLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIPNIIQQL--CGKQ 118
Query: 731 FLTTFVQTSRVFAPELGRFVYRRPFQAATLYFSSILIKRA 850
+ F + + +V ++ F + LI +A
Sbjct: 119 LIFKFKLSEQNLTEGTPNYVVKKTFVPDYMLEKQYLINKA 158
>11_04_0407 +
17335773-17335777,17335930-17336635,17336844-17337542,
17340710-17340724,17341479-17342126
Length = 690
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +2
Query: 584 HDTLFTTKLFDDVFAARIVAHIF--SDVIASDGEYDRIAALLEQVHQGAKQFLTTFVQTS 757
HD L + + +VA +F + + + + +A +E H G KQFL QTS
Sbjct: 459 HDYTHRLSLTEKEASTNLVAELFRTNSQMGTQAQSGALAITVEAEHDGVKQFLGDNAQTS 518
>08_01_0987 +
9979651-9979746,9979818-9980058,9980947-9981090,
9981253-9981313,9981603-9982061,9982472-9982529,
9983579-9983839
Length = 439
Score = 28.7 bits (61), Expect = 6.4
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 614 DDVFAARIVAHIFSDVIASDGEYDRIAALLEQVHQGAKQFLTTFVQ 751
DD+F AR VA D A + + RIA + + +GA + T VQ
Sbjct: 364 DDLFTARFVAATNGDEDAEEMQRYRIARMATKEAEGAAGGVATMVQ 409
>01_06_1815 -
40064351-40064887,40064987-40065634,40065834-40065890,
40065921-40065941,40066714-40066941
Length = 496
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 754 RLNE-RGQELLRTLVHLLEKSRDPVVLAVACYDIGEYVRHYPR 629
R+ E R E+LRTL+ L + V++ AC+ G Y+ Y R
Sbjct: 266 RMQETRDAEILRTLIDFLVSA---VIVMSACFGYGTYIYSYQR 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,360,886
Number of Sequences: 37544
Number of extensions: 419325
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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