Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P09_pT_J02
(822 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 207 7e-54
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 157 8e-39
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 140 2e-33
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 140 2e-33
01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819 31 0.84
03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112 30 1.9
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 4.5
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 29 4.5
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 5.9
07_03_1412 - 26392239-26392826 28 7.8
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60... 28 7.8
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 207 bits (506), Expect = 7e-54
Identities = 113/223 (50%), Positives = 145/223 (65%), Gaps = 3/223 (1%)
Frame = -2
Query: 821 ITRXDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAP-VIFAEDEEYKRVNFEKF 645
+TR DQD YA+ S +R AA + AF E+VP+ VP RG P V+ +DE + + K
Sbjct: 177 LTREDQDAYAIQSNERGIAARNSGAFAWEIVPIEVPVGRGKPPVLVDKDEGLDKFDPVKL 236
Query: 644 TKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPID 465
KL F++ GTVTAGNAS+++DG A+ L ++ IARI GFAD P
Sbjct: 237 KKLRPSFKENGGTVTAGNASSISDGAAALVLVSGQKAQELGLQVIARIKGFADAAQAPEL 296
Query: 464 FPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLG 285
F +PA+AIPK L G+ V +EINEAFS VA+ANQKLLG+ KINVHGGAVSLG
Sbjct: 297 FTTSPALAIPKALANAGLESSRVDYYEINEAFSAVALANQKLLGIPSEKINVHGGAVSLG 356
Query: 284 HPIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIE 162
HP+G SGARI+V L L K G+ GVA +CNGGGGAS++++E
Sbjct: 357 HPLGCSGARILVTLLGVLREKGGKIGVAGVCNGGGGASALVLE 399
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 157 bits (382), Expect = 8e-39
Identities = 93/222 (41%), Positives = 129/222 (58%), Gaps = 2/222 (0%)
Frame = -2
Query: 821 ITRXDQDEYAVNSYKRSAAAYEAKAFVDELVPVPVPQKRGAPVIFAEDEEYKRVNFEKFT 642
I+R +QD YA+ S +R+ AA ++ F E+ PV + RG P + + +E + K T
Sbjct: 183 ISREEQDLYAIQSNERAIAARDSGTFSWEIAPVEISSGRGKPPLIVDKDE----SLAKCT 238
Query: 641 KLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGECDPIDF 462
L + + +DG AK L ++ IARI G+AD P F
Sbjct: 239 SLPSRLPSK----------IRSDGAAAIVLVSGQKAKSLGLQVIARIRGYADAAQAPELF 288
Query: 461 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSLGH 282
PA+AIPK + G++ + +EINEAFSVVA+ANQKLLG+ K+N+ GG VSLGH
Sbjct: 289 TTTPALAIPKAVSNAGLQTSQIDYYEINEAFSVVALANQKLLGIPSGKLNLSGGGVSLGH 348
Query: 281 PIGMSGARIVVHLCHAL--KKGEKGVASICNGGGGASSVMIE 162
PIG SGARI+V L L K G+ GVA +CNGGGGAS++++E
Sbjct: 349 PIGCSGARIIVTLLGILRHKNGKIGVAGVCNGGGGASALVVE 390
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 140 bits (338), Expect = 2e-33
Identities = 89/231 (38%), Positives = 131/231 (56%), Gaps = 10/231 (4%)
Frame = -2
Query: 821 ITRXDQDEYAVNSYKRSAAAYEAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRV 660
ITR +QD+ AV S++++AAA + F +E+VPV V K G V+ A+D
Sbjct: 208 ITRMEQDQAAVESHRKAAAAAASGKFKEEIVPVHTKIVDPKTGEEKEIVVSADDGIRPGT 267
Query: 659 NFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGE 480
+ +KL F K+ GT TAGNAS ++DG A + + + FA
Sbjct: 268 SLAVLSKLKPAFSKD-GTTTAGNASQVSDGAGAVLLMRRDIAMQKGLPIVGVFRSFAAVG 326
Query: 479 CDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGG 300
DP + PAVAIP ++ G++ +DV L+EINEAF+ V K LGLDP+K+NV+GG
Sbjct: 327 VDPAIMGVGPAVAIPAAVKAAGLQIDDVDLFEINEAFASQYVYCCKKLGLDPAKVNVNGG 386
Query: 299 AVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 159
A++LGHP+G +GAR V L + +K+ K GV S+C G G ++ + E+
Sbjct: 387 AMALGHPLGATGARSVSTLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFER 437
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 140 bits (338), Expect = 2e-33
Identities = 87/231 (37%), Positives = 128/231 (55%), Gaps = 10/231 (4%)
Frame = -2
Query: 821 ITRXDQDEYAVNSYKRSAAAYEAKAFVDELVPVP---VPQKRGAP---VIFAEDEEYKRV 660
+TR +QD+ A S++R+AAA A F DE+VPVP V K G VI +D
Sbjct: 206 VTRQEQDQAAAESHRRAAAATAAGKFKDEIVPVPTKIVDPKTGEEKKVVISVDDGIRPGT 265
Query: 659 NFEKFTKLSTVFQKENGTVTAGNASTLNDGXXXXXXXXXXXAKRLNVKPIARIVGFADGE 480
KL VF+K+ GT TAGN+S ++DG A + + + FA
Sbjct: 266 TASGLAKLKPVFRKD-GTTTAGNSSQVSDGAGAVLLMRRDVAMKKGLPILGVFRSFAAVG 324
Query: 479 CDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGG 300
DP + PAVAIP ++ G++ ED+ L+E+NEAF+ V LGLD SK+NV+GG
Sbjct: 325 VDPAVMGVGPAVAIPAAVKSAGLQIEDIDLFELNEAFASQFVYCCNKLGLDRSKVNVNGG 384
Query: 299 AVSLGHPIGMSGARIVVHLCHALKKGEK----GVASICNGGGGASSVMIEK 159
A++LGHP+G +GAR V L + +K+ + GV ++C G G ++ + E+
Sbjct: 385 AIALGHPLGATGARCVATLLNEMKRRGRDCRFGVVTMCIGSGMGAAAVFER 435
>01_06_1505 + 37827495-37827977,37828424-37828914,37828997-37829819
Length = 598
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Frame = +1
Query: 475 SHSPSANPTIRAIGL----TFNLLAASAVINTKA--AAPSFNVEALPAVTVPFSFWNTVD 636
S +P T++ IG+ + L+ SA++ T+ A F + P T+P SFW V
Sbjct: 429 SKNPRGITTLQRIGIGLIISVILMVVSALVETRRLMVARDFGLVDNPEATIPMSFWWVVP 488
Query: 637 NFV 645
F+
Sbjct: 489 QFI 491
>03_05_0254 + 22425038-22425197,22426042-22429307,22430420-22431112
Length = 1372
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/79 (27%), Positives = 37/79 (46%)
Frame = +1
Query: 364 TLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNLLAAS 543
T + + N+T L V NLG ++AG +G S + ++ + G NL +
Sbjct: 1172 TQSGAELDANSTVEVLGEVLGTNLGASSAGNLGVS----AIRSDERVGLAGDARNLRLGT 1227
Query: 544 AVINTKAAAPSFNVEALPA 600
++ N + + S VE LPA
Sbjct: 1228 SMPNLSSDSASAQVEVLPA 1246
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 205 EATPFSPFFKAWHRCTTMRAPDIPIG*PKLTAP 303
+ PF+ F W RC M P P+ PK AP
Sbjct: 168 DGCPFTMFAPFWDRCLCMPDPAAPLLPPKRIAP 200
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = -2
Query: 377 EAFSVVAVANQKLLGLDPSKINVHGGAV 294
EAF+VV A++++LGL P + + GG V
Sbjct: 142 EAFAVVREASKRVLGLRPFDVQLIGGMV 169
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 397 TSSFLTPVFSNNLGMATAGAIGKSM------GSHSPSANPTIRAIGLTFNLLAASAVIN- 555
TS T S + +ATAG +S GSH+P++ +++A NLL++ N
Sbjct: 202 TSQTPTRGVSPQVNLATAGIPTQSSTPIAGYGSHTPASTTSVKANSADLNLLSSPPAAND 261
Query: 556 TKAAAPSFN 582
+KA P N
Sbjct: 262 SKALVPLGN 270
>07_03_1412 - 26392239-26392826
Length = 195
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 461 PIAPAVAIPKLLEKTGVRKEDVALWEINEAFS 366
P+ A+P LE+T VR + V L+ EAF+
Sbjct: 88 PMTEGRALPPSLEETAVRAQGVYLYNSKEAFN 119
>05_01_0090 +
598311-599597,599884-599997,600186-600450,600994-601109
Length = 593
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = -2
Query: 305 GGAVSLGHPIGMSGARIVVHLCHA--LKKGEKGVASICNGGGGASSVM 168
GG S+GH + G H L +AS GGGG +SV+
Sbjct: 43 GGCNSIGHILSFDGRDAPAFAIHGVLLPSNPSTMASTGGGGGGGASVL 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,277,016
Number of Sequences: 37544
Number of extensions: 412080
Number of successful extensions: 1372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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