Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J01
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    71   2e-13
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    29   0.44 
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   4.1  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.4  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/57 (57%), Positives = 44/57 (77%)
 Frame = -1

Query: 644 AXKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 474
           A  E  CSE SSR  AM+NASK+AG+MI+K ++ +NR RQA IT ELI+I++GA +L
Sbjct: 244 AMAEAHCSEMSSRRNAMENASKSAGDMINKFSIQYNRQRQASITNELIDIVTGANSL 300


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 621 RAVVPHDRHGQRLKERRRDDRQADPHVQQDPSSCHHQGAHR 499
           R+  P +RH ++ KER R + +   H + +P   H    HR
Sbjct: 127 RSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSRHHR 167


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 164 VVVPCYFGWYPHQLLITKV 220
           +V P YFGW+P   L+ +V
Sbjct: 136 LVKPIYFGWWPENFLLREV 154


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 61   FRVSVAGMGAVQCRHRKSYKLI*GGSGNKYGNEGSSSTLLFW 186
            F +  AG+  ++  H+K Y ++  G  NKYG    +   +FW
Sbjct: 1337 FNLLHAGVSYIRI-HQKGYGVV--GVSNKYGKRSKARYPIFW 1375


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 612 VPHDRHGQRLKERRRDDRQADPHVQQDPSSCHHQGAHRD 496
           VPH  H  RL+++RR D   D     +  S      H D
Sbjct: 182 VPHGHHLTRLRKKRRRDDDIDLSGLYETKSSSPPAIHSD 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,849
Number of Sequences: 5004
Number of extensions: 45097
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)