Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_J01
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    87   2e-17
07_03_0571 - 19602755-19603831                                         56   3e-08
03_06_0415 - 33775143-33775305,33775438-33775565,33775654-337757...    28   5.6  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/58 (70%), Positives = 51/58 (87%)
 Frame = -1

Query: 644 AXKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAALD 471
           A  E ACSE  +RM+AMD++S+NAGEM+D+LTLT+NRTRQA IT ELIEIISGA+AL+
Sbjct: 310 AALENACSELGARMSAMDSSSRNAGEMLDRLTLTYNRTRQASITTELIEIISGASALE 367


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 27/57 (47%), Positives = 41/57 (71%)
 Frame = -1

Query: 644 AXKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVITRELIEIISGAAAL 474
           A +E   SE ++RM+AM +A+ NA E+   L++ +NR RQA IT E++EI++GA AL
Sbjct: 301 ALQESLASELAARMSAMSSATDNAIELRKNLSMVYNRQRQAKITGEILEIVAGADAL 357


>03_06_0415 -
           33775143-33775305,33775438-33775565,33775654-33775761,
           33775809-33775909,33776265-33776805,33777290-33777847
          Length = 532

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 621 RAVVPHDRHGQRLKERRRDDRQADPHVQQDPSSCHHQGAH 502
           R  VPH     R K +R D+R A  H +Q+ SS    G H
Sbjct: 74  RGSVPHRSDASR-KIKRDDNRAAGDHDEQNKSSKSKDGKH 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,620,532
Number of Sequences: 37544
Number of extensions: 292163
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)