Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I24
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   1.5  
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    28   2.6  
05_04_0439 + 21260445-21260790,21264038-21264786                       27   6.0  
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           27   6.0  
07_01_0864 - 7185070-7185141,7185274-7185402,7185585-7185695,718...    27   8.0  
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177...    27   8.0  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 232 SSIVTTAAPPFKPKRITASRQKWAGRWYLPARTHK 336
           SS+ + AAPPF P RIT+      GR +  +   K
Sbjct: 164 SSVASAAAPPFDPSRITSYAAHPNGRAFFVSVARK 198


>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 282 SNAFRLEGWG-SRCNYT*DLRTYISRWVAHLRRRCLCAPVT 163
           ++A  L G+  S+  YT  LR Y++R    + + C C PVT
Sbjct: 352 ADAGELHGYHTSKVAYTDRLRVYVTRCALLIVQYCCCQPVT 392


>05_04_0439 + 21260445-21260790,21264038-21264786
          Length = 364

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 278 LLLHGRNGQGGGTYP 322
           +LLHG  G GGG YP
Sbjct: 261 MLLHGGGGGGGGRYP 275


>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 311 HRPAHFCREAVMRFGLKGGAAVVTILETLELISQGGWR 198
           H+  H  R A++R  +KG   +  ++  LE +  GGWR
Sbjct: 338 HKIKHEPRAALIRV-IKGKLTINEVIAELERLIPGGWR 374


>07_01_0864 -
           7185070-7185141,7185274-7185402,7185585-7185695,
           7186114-7186292,7186479-7186576,7186691-7186956,
           7187895-7188050,7188131-7188319,7188711-7188824,
           7189131-7189273,7189683-7189818,7189954-7190058
          Length = 565

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 227 RSQV*LQRLPHPSSRNAL-LLHGRNGQGGGTYPRGLIRVQLS 349
           RS + L R PHP+    L LL    G GGG+ PR   R++ S
Sbjct: 13  RSPLVLHRHPHPAHHRRLRLLPLVAGGGGGSPPRVGRRIRAS 54


>02_05_0419 -
           28814754-28816114,28816749-28817435,28817554-28817774,
           28818536-28818750
          Length = 827

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 86  SVNYIVFFCFLLLDGWTSSQPTWC 157
           S +++VF   + L+G T  QP WC
Sbjct: 637 STDHLVFCGDVSLEGRTGGQPAWC 660


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,612,735
Number of Sequences: 37544
Number of extensions: 189038
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)