Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I24
         (416 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107427-1|AAI07428.1|  389|Homo sapiens NARG2 protein protein.        30   2.7  
BC071685-1|AAH71685.1|  361|Homo sapiens NARG2 protein protein.        30   2.7  
BC013684-1|AAH13684.1|  332|Homo sapiens NARG2 protein protein.        30   2.7  
AK021958-1|BAB13948.1|  332|Homo sapiens protein ( Homo sapiens ...    30   2.7  
AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.                30   2.7  

>BC107427-1|AAI07428.1|  389|Homo sapiens NARG2 protein protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 262 FKPKRITASRQKWAGRWYLPARTHKSPVEYESVTSII 372
           F PK +  + Q+  G   +P R+H++PV  E+ +S +
Sbjct: 335 FPPKSLDTTTQQKIGGTRMPTRSHRNPVSMETKSSCL 371


>BC071685-1|AAH71685.1|  361|Homo sapiens NARG2 protein protein.
          Length = 361

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 262 FKPKRITASRQKWAGRWYLPARTHKSPVEYESVTSII 372
           F PK +  + Q+  G   +P R+H++PV  E+ +S +
Sbjct: 307 FPPKSLDTTTQQKIGGTRMPTRSHRNPVSMETKSSCL 343


>BC013684-1|AAH13684.1|  332|Homo sapiens NARG2 protein protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 262 FKPKRITASRQKWAGRWYLPARTHKSPVEYESVTSII 372
           F PK +  + Q+  G   +P R+H++PV  E+ +S +
Sbjct: 278 FPPKSLDTTTQQKIGGTRMPTRSHRNPVSMETKSSCL 314


>AK021958-1|BAB13948.1|  332|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11896 fis, clone HEMBA1007319. ).
          Length = 332

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 262 FKPKRITASRQKWAGRWYLPARTHKSPVEYESVTSII 372
           F PK +  + Q+  G   +P R+H++PV  E+ +S +
Sbjct: 278 FPPKSLDTTTQQKIGGTRMPTRSHRNPVSMETKSSCL 314


>AF502591-1|AAQ07460.1|  982|Homo sapiens BRCC1 protein.
          Length = 982

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 262  FKPKRITASRQKWAGRWYLPARTHKSPVEYESVTSII 372
            F PK +  + Q+  G   +P R+H++PV  E+ +S +
Sbjct: 928  FPPKSLDTTTQQKIGGTRMPTRSHRNPVSMETKSSCL 964


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,064,004
Number of Sequences: 237096
Number of extensions: 1114150
Number of successful extensions: 1504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)