Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I21
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   1.9  
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    26   2.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   4.4  
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    25   4.4  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   7.7  

>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 156 C*SETGKVSSQALELVRLTHH*VKVAVVVNGDADATVVVHELFKSNLPIDCSIGL 320
           C  + G  +   +ELVRL  + V + V+ +  A       E+FK     DC   L
Sbjct: 462 CMDQDGSNAGYDIELVRLVKNSVNIPVIASSGAGIPQHFEEVFKET---DCDAAL 513


>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 377 IRAAXETEDVIMKRFLANFESDGTVDGKV 291
           I A  E ED+I++  L NF    T++G +
Sbjct: 61  IDAEPELEDIIVRTKLWNFRQSFTIEGSI 89


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 347 IMKRFLANFESDGTVDGKVTL 285
           +  R+L  F+SDG+V  KV L
Sbjct: 572 VSSRYLPEFQSDGSVSEKVRL 592


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 320 ESDGTVDGKVTLEEFMNYYSGISVS 246
           E D   DGK++ EEF +  SG +V+
Sbjct: 142 EVDKDRDGKISFEEFKDIVSGSNVT 166


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 136 PWCVDVSVRARQVK 177
           PWC+D + R R VK
Sbjct: 535 PWCIDEAARRRFVK 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,555
Number of Sequences: 5004
Number of extensions: 26036
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)