Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I21
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical pr...    31   0.41 
AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C pr...    31   0.41 
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    27   3.8  
AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine re...    27   6.7  
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ...    26   8.8  
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport...    26   8.8  

>Z48585-7|CAA88482.1|  160|Caenorhabditis elegans Hypothetical
           protein ZK673.7 protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = -3

Query: 356 EDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGISVSIDNDCYFDLMMRQAYKL 195
           E+  +K+ +  F++DG+  G++  EEF    +   V+ +ND   +  +R+A++L
Sbjct: 52  EERDLKQLIKEFDADGS--GEIEFEEFAAMVANFVVNNENDEGLEEELREAFRL 103


>AB079299-1|BAB84566.1|  160|Caenorhabditis elegans troponin C
           protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 15/54 (27%), Positives = 32/54 (59%)
 Frame = -3

Query: 356 EDVIMKRFLANFESDGTVDGKVTLEEFMNYYSGISVSIDNDCYFDLMMRQAYKL 195
           E+  +K+ +  F++DG+  G++  EEF    +   V+ +ND   +  +R+A++L
Sbjct: 52  EERDLKQLIKEFDADGS--GEIEFEEFAAMVANFVVNNENDEGLEEELREAFRL 103


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +3

Query: 228 VAVVVNGDADATVVVHELFKSNLPIDCSIGLKIREEPFHYYI 353
           + +++N     +    ++F  N P  C++ L +  +P+ YY+
Sbjct: 269 ITIILNIHIAGSSYFIDIFSENHPTACAVSLFLFYDPYQYYL 310


>AF022971-9|AAG23978.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein38 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 276 ELFKSNLPIDCSIGLKIREEPFHYYI 353
           ++F  N P  C++ L +  +P+ YY+
Sbjct: 285 DIFSENHPTACAVSLFLFYDPYQYYL 310


>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
           related protein 2 protein.
          Length = 1272

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 141 VRGCEC*SETGKVSSQALELVRLTH 215
           +R  +   E GKV+SQA+E +R  H
Sbjct: 878 IRDTQLLEEAGKVASQAVEHIRTVH 902


>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
           PGP-2 protein.
          Length = 1272

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 141 VRGCEC*SETGKVSSQALELVRLTH 215
           +R  +   E GKV+SQA+E +R  H
Sbjct: 878 IRDTQLLEEAGKVASQAVEHIRTVH 902


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,090,477
Number of Sequences: 27780
Number of extensions: 143411
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)