Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I20
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   1.9  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   4.4  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   4.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   4.4  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 167 MDKPSESVVIFFSLNIGAFSHRELPQLLQECRGS 268
           +DKP ESV  F S+  GAFS      L  + +G+
Sbjct: 400 LDKPVESVFGFISVLPGAFSAYRFEALQNDSQGN 433


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 330 DTFKRFFKCLDCKNRTVSLELLPLHSCN-NCGSSRWEKAPMLREKKITTLSDGLSXQG*R 154
           +T  RF K     N   SL    + + N NC  S W K P +++ K+  L      +  R
Sbjct: 258 ETLNRFGKAY--VNNEESLFTSSVVNINMNCDISIWSKIPPIQDGKVLVLFG--ENEVFR 313

Query: 153 RNIFGWTS 130
             I  WTS
Sbjct: 314 DEILSWTS 321


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 218 AFSHRELPQLLQECRGSNSKETVLFLQSKHLKNLLN 325
           A+ +  LP  + E +  N   T+L L++  + +LLN
Sbjct: 853 AYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLN 888


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 128 QLVHPKMFLLHPXMDKPSESVVIFFSLNIGAFSHRELPQLLQECRGSNSKETVLFLQSKH 307
           +++ P + L     D   E  V+ +   + AFS R+LP      R   S E +  ++SK 
Sbjct: 373 EMIDPDITLAMESCDASKEQPVLVYISKMVAFSERDLP---NHRRKQLSAEEMKLIRSKL 429

Query: 308 LKNLLNVSNT 337
            +++ +  NT
Sbjct: 430 SESIESGINT 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,217
Number of Sequences: 5004
Number of extensions: 34453
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)