Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P09_pT_I17
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.071
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    28   1.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   2.7  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    26   4.7  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   6.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   6.2  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    25   8.1  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   8.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.1  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 31.9 bits (69), Expect = 0.071
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -3

Query: 167 GGAIRASRCACPASWRWTCRSPWALCG-SWGTCSSASTTRSSNAGNRQLGSRPPCE 3
           GG    +   C   + W C  PW   G +W TC+      S++A + Q  SR   E
Sbjct: 302 GGCNHMTCKKCKYEFCWVCLGPWTEHGNNWYTCNRYEEKSSTSARDSQSKSRASLE 357


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 173 HVVVALEREVVPGDGKGDSRQVRYEAAVHDVLP 271
           H VVAL   + P DGK +     Y++  HDV+P
Sbjct: 25  HEVVALAN-LHPEDGKDEIDSFMYQSVGHDVIP 56


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 2   AHTAGANRAGGSPRSNSV*YLPMNTSPRIHRGPMGFGTSS 121
           A    A    G+P SN + + P N    I  GPMG  T S
Sbjct: 242 ATAINAQSQSGNPLSNPL-FQPSNVPQSIPSGPMGMKTGS 280


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 481 PAXYRGDLVRVPLLRDTYWEFHMD--SVNVNXSRFCAQGCSAIADTGTSLI 335
           P    G    + L+ D YW  H+D  SV +  +   A+ C AI  T  +++
Sbjct: 264 PVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMM 314


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 134 PASWRWTCRSPW 99
           P +W W C  PW
Sbjct: 194 PKNWAWACDGPW 205


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 567 DSCSPSXRSISTGTPGRQR 511
           DS SPS RSI +GTP   R
Sbjct: 19  DSESPSSRSIGSGTPAPVR 37


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 315 TSLEGPAISDVPVSAMAEQPWAQKRLXLTLTESMWNSQY 431
           T+L GP      V+A    P   K   L  T S WN  Y
Sbjct: 310 TALNGPGFGITLVNASKATPDIFKYFDLPTTASGWNVSY 348


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 150 ITVCLSGFMALDVPKPMGPLWILGDVFI-GKYYTE 49
           I VC+SG++AL      G  +   +VF+ GK Y E
Sbjct: 332 ILVCISGYIALIYALLYGYFFAYPNVFVKGKGYNE 366


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
 Frame = +3

Query: 21  TELAVPRVRTPCSTCR*TRPPGSTEGPWASARPAP*SRTGTP*CPNCAT----RST*SLP 188
           T  ++P      +    T PP ST        PA  S TGT   P  +T     ++ S+P
Sbjct: 341 TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400

Query: 189 SSVKSFPAMVKVTRGRCGMRLQSTTYCPKAMAVAPTAALRASTSL 323
            +  S   +             +TT C  + +V  T+    ST L
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPL 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,896
Number of Sequences: 5004
Number of extensions: 39721
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)